Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021737
(745 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 112 3e-25
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 112 3e-25
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 2.5
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 29 4.3
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 29 4.3
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 5.7
At2g43420.1 68415.m05396 3-beta hydroxysteroid dehydrogenase/iso... 28 5.7
At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati... 28 7.5
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 7.5
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 27 9.9
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 27 9.9
At5g26080.1 68418.m03103 proline-rich family protein contains pr... 27 9.9
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 27 9.9
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 27 9.9
At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like... 27 9.9
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 112 bits (269), Expect = 3e-25
Identities = 47/53 (88%), Positives = 50/53 (94%)
Frame = +2
Query: 254 YQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 412
+QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 66 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 118
Score = 78.2 bits (184), Expect = 5e-15
Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +3
Query: 513 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 692
+PE+PLVV+D + + KT A+ L+++ A+ D K S +R GKGKMRNRR I RKG
Sbjct: 153 VPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKG 212
Query: 693 PLIIFNKDQG-LTRAFRN 743
PL++F + + +AFRN
Sbjct: 213 PLVVFGTEGAKIVKAFRN 230
Score = 62.5 bits (145), Expect = 3e-10
Identities = 32/61 (52%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +3
Query: 78 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 251
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 252 G 254
G
Sbjct: 65 G 65
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +1
Query: 454 SVAATGVPALVQARGHIIERFPNFP 528
++AAT VPALV ARGH IE P P
Sbjct: 133 AIAATAVPALVMARGHKIENVPEMP 157
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 112 bits (269), Expect = 3e-25
Identities = 47/53 (88%), Positives = 50/53 (94%)
Frame = +2
Query: 254 YQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 412
+QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 65 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 117
Score = 77.0 bits (181), Expect = 1e-14
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +3
Query: 513 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 692
+PE+PLVV+D + + KT A+ L+++ A+ D K S +R GKGKMRNRR I RKG
Sbjct: 152 VPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKG 211
Query: 693 PLIIFNKD-QGLTRAFRN 743
PL+++ + + +AFRN
Sbjct: 212 PLVVYGTEGSKIVKAFRN 229
Score = 64.5 bits (150), Expect = 7e-11
Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Frame = +3
Query: 69 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 242
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 243 KEAG 254
K+AG
Sbjct: 61 KKAG 64
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +1
Query: 454 SVAATGVPALVQARGHIIERFPNFP 528
++AAT VPALV ARGH IE P P
Sbjct: 132 AIAATAVPALVMARGHKIENVPEMP 156
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 93 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 239
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 245 GGWYQTSAESW--GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 373
GG YQ + G GR R +GGG + G G+ G+ CR G
Sbjct: 75 GGNYQGGGGRYQGGGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 571 CLVLLISWTLSATTRGSSGIFQ*CV 497
CLVLL+S +A T+ SGIF C+
Sbjct: 9 CLVLLVSILRAAVTKPDSGIFTGCL 33
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 144 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 239
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 144 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 239
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At2g43420.1 68415.m05396 3-beta hydroxysteroid
dehydrogenase/isomerase family protein contains Pfam
profile PF01073 3-beta hydroxysteroid
dehydrogenase/isomerase domain; similar to
NAD(P)-dependent steroid dehydrogenase from Homo sapiens
[SP|Q15738], Mus musculus [SP|Q9R1J0]
Length = 561
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = -3
Query: 272 IRHWFGTSLLAHAVGLPRVLGHRNVNIIDQVRTYGRLEHEREGLGC---TLHRLAL 114
+R W S + +G PR V ++ V + + HE+EGLG T H+ AL
Sbjct: 263 VRFWDFVSHIVEGLGYPRPSIKLPVRLVLYVFSLLKWTHEKEGLGSNYDTAHQYAL 318
>At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein
LSm4 [Mus musculus]
Length = 129
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +3
Query: 414 VASTSDSGERPWRQRCCYRRPSTRSG*RTHY*KIPELPLVVADKVQEINKTK 569
V TS G+R WR CY R +T Y ++P+ V DKVQE KT+
Sbjct: 43 VICTSKDGDRFWRMPECYIRGNT-----IKYLRVPD---EVIDKVQE-EKTR 85
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 371 HHDTCYRRHPDRTYEYHHHGHAEF 300
HH Y H Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 383 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVRYPMIRH 264
R++ H + +H D + E+HHH H R+H + H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 383 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVRYPMIRH 264
R++ H + +H D + E+HHH H R+H + H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At5g26080.1 68418.m03103 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 141
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +1
Query: 211 PRTRGSPTA*ARRLVPNQCRIMGYRTCCRPNSACPWWW 324
P T SP P + YR P S PWWW
Sbjct: 102 PPTPISPPPKVHHPAPQAQKAFYYRQSPPPPSGQPWWW 139
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +2
Query: 218 LEAALLREQGGWYQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 388
+ AL+R + G T AE + + + ++P G G G+ G FGN GG F
Sbjct: 76 MAVALIRRRMGAKPT-AEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134
Query: 389 TKPW 400
W
Sbjct: 135 ISKW 138
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -3
Query: 371 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 288
HHD + H D +++ HH H H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338
>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
thaliana]
Length = 359
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +2
Query: 224 AALLREQGGWYQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK 394
A+LL YQ + + W AV R GGG ++ A GN+ G FA K
Sbjct: 297 ASLLESIKTCYQAAGQRWPNFIAVDFYKRSDGGGAPQAVDVANGNLICGCDNFAACK 353
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,184,954
Number of Sequences: 28952
Number of extensions: 348683
Number of successful extensions: 1115
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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