Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021736
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    28   0.078
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    26   0.24 
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    24   0.96 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   0.96 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.3  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    24   1.3  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   2.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   2.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.1  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 0.078
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 321 YQCPICESTFVNTSDLEVHVNVDHKDILSPQKDDQIDNASCDD 449
           +QCP+C   F N   L+ H+ + H    +    +QI  A   D
Sbjct: 195 HQCPVCHKKFTNALVLQQHIRL-HTGEPTDLTPEQIQAAEVKD 236



 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 321 YQCPICESTFVNTSDLEVHVNV 386
           ++C IC   F    +L+ H+ V
Sbjct: 163 FKCKICGRAFTTKGNLKTHMGV 184


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +3

Query: 321 YQCPICESTFVNTSDLEVHV---NVDHKDILSPQKDDQIDNASCDDIVMMEESPVS 479
           + CPIC   F+ +  L  HV   N + K   S    D  +N S  DI     SP S
Sbjct: 375 FACPICNKRFMRSDHLAKHVKTHNGNGKKGSSDSCSDSEEN-SQSDITNNVNSPAS 429


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +3

Query: 321 YQCPICESTFVNTSDLEVHV 380
           ++CP+C+  F  +S +  H+
Sbjct: 50  FRCPVCDRRFSQSSSVTTHM 69



 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 321 YQCPICESTFVNTSDLEVHVNV 386
           Y+C +C+  F ++S L  H+ +
Sbjct: 78  YRCRLCKKAFSDSSTLTKHLRI 99



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 321 YQCPICESTFVNTSDLEVHV 380
           Y+C  C  +F   ++L  HV
Sbjct: 22  YRCIDCNKSFSQAANLTAHV 41


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +3

Query: 321 YQCPICESTFVNTSDLEVHV 380
           ++CP+C+  F  +S +  H+
Sbjct: 306 FRCPVCDRRFSQSSSVTTHM 325



 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 321 YQCPICESTFVNTSDLEVHVNV 386
           Y+C +C+  F ++S L  H+ +
Sbjct: 334 YRCRLCKKAFSDSSTLTKHLRI 355



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 321 YQCPICESTFVNTSDLEVHV 380
           Y+C  C  +F   ++L  HV
Sbjct: 278 YRCIDCNKSFSQAANLTAHV 297


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 309 HASSYQCPICESTFVNTSDLEVHVNVDHKDILSP 410
           H  +Y C    S  V T    + +NV  + IL P
Sbjct: 672 HVGNYTCLASNSASVTTYTTSLFINVPPRWILEP 705


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 37  IRQLAFNSKLNFSDQIYNETLKLQCLLCDFKST 135
           + +L  N K+  SD+ +    K++ L C+ K+T
Sbjct: 160 MHRLLANYKVITSDEFFYLVSKIESLACELKNT 192


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 450 CHHMTHCLFDRLSVDLIYPCDPHSRG-PPDRTCS 352
           CH    CL  ++ +DL+   D    G PP+ T S
Sbjct: 16  CHRYISCLKGKMPIDLV--IDERDGGKPPELTGS 47


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 450 CHHMTHCLFDRLSVDLIYPCDPHSRG-PPDRTCS 352
           CH    CL  ++ +DL+   D    G PP+ T S
Sbjct: 172 CHRYISCLKGKMPIDLV--IDERDGGKPPELTGS 203


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 245 PTRHNPGEPYSGPDNGYVTWTS 310
           P       PYS P   Y TW++
Sbjct: 288 PDHIQQATPYSAPGPTYSTWST 309


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = +1

Query: 46   LAFNSKLNFSDQIYNETLKLQCLLCDFKSTCPRKLEEHINRAHF 177
            LAF+   N  D +      ++C  CD           H+++ HF
Sbjct: 1037 LAFSWACN--DAVMTSDSIMKCAFCDTPFISKGAYRHHLSKMHF 1078


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,476
Number of Sequences: 336
Number of extensions: 3271
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)