Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021736
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   1.8  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    27   2.4  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    27   2.4  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   2.4  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    27   3.1  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    26   5.5  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   7.3  
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   9.6  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.6  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   9.6  

>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 309 HASSYQCPICESTFVNTSDLEVHVNVDH 392
           ++ ++ CP C S+F  +  L  HVN  H
Sbjct: 43  NSKAFICPHCSSSFTRSDVLNRHVNQKH 70



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 203 AFKDGDVKSKCARFICSSSFRGHVDLKSH-RRHCNFK 96
           A+++GD++ KC    C+ SF      + H R H N K
Sbjct: 9   AYQEGDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSK 45


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 88  NETLKLQCLLCDFKSTCPRKLEEHINRAH-FD 180
           +E  +  CL CD   TC + L  H   AH FD
Sbjct: 53  DEVHEFCCLFCDSTFTCLKDLWSHCKEAHNFD 84


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 118 CDFKSTCPRKLEEHINRAHFDLTSPS 195
           C+ +    +KL+ H+NRAH  + S S
Sbjct: 151 CELRFATKQKLQNHVNRAHEKIISYS 176



 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +3

Query: 309 HASSYQCPI--CESTFVNTSDLEVHVNVDHKDILS 407
           H   Y C    CE  F     L+ HVN  H+ I+S
Sbjct: 140 HLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIIS 174


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +3

Query: 306 PHASSYQCPICESTFVNTSDLEVHVNVDHKDILSPQKDDQIDNASCDDIVMMEESPVSNC 485
           P A+S  CPIC+  F +    E  V V    +   +++ +I +A+C   V   E+  SN 
Sbjct: 512 PIAASEPCPICQEKFQSVWHEEAEVWVFMNAV---EEEGRIFHATCLQEVRPSENKHSNT 568

Query: 486 PVCCQPL 506
               Q L
Sbjct: 569 NTSTQNL 575


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 76  DQIYNETLKLQCLLCDFKSTCPRKLEEHI-NRAHFDLTSPS 195
           ++I NE    +CL C       + L EH+ N+ HF L   S
Sbjct: 137 EKIKNELESFRCLCCHVPCKNKKLLREHMNNKRHFRLDPKS 177


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 321 YQCPICESTFVNTSDLEVHVNV 386
           Y+C +C++ FV   DL+ H+ +
Sbjct: 473 YRCDLCKAGFVRHHDLKRHLRI 494


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 251 RHNPGEPYSGPDNG 292
           RH+P  PYS P+NG
Sbjct: 361 RHSPLHPYSVPENG 374


>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 269 VLQGYVGLDKPRVGLSELAFAFAFKD 192
           +L G++ L K  +  + L F FAF D
Sbjct: 97  ILTGFIYLKKEHIASNSLTFTFAFCD 122


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = +2

Query: 272 YSGPDNGYVTWTSCFIIPMPDLRKYIREHVRSG 370
           + G D+  + W   ++  + +L  Y++ H ++G
Sbjct: 236 FKGKDDLQIEWVRSYLTLLTELITYVKTHFKTG 268


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 397 SL*STFTWTSRSDVFTNVLSQIGHWYD 317
           S+ S+ T+ S++D F+N ++ + H Y+
Sbjct: 305 SIPSSVTFNSQNDCFSNAMNYLEHEYE 331


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 351 VNTSDLEVHVNVDHKDILSPQKDDQIDNAS 440
           ++T +L + +NVD  D LS      IDN S
Sbjct: 644 LSTEELLIAMNVDSMDTLSDIGQSDIDNLS 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,697
Number of Sequences: 5004
Number of extensions: 54094
Number of successful extensions: 188
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)