Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021736
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_59700| Best HMM Match : SCP (HMM E-Value=1.6e-14) 32 0.36
SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 0.62
SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 0.83
SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.1
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11) 31 1.1
SB_8854| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.1
SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.1
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 1.9
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 1.9
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_42412| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-33) 29 3.3
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.3
SB_3590| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40) 29 4.4
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 5.8
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_21372| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26) 28 5.8
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 5.8
SB_48551| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 7.7
SB_25397| Best HMM Match : zf-C2H2 (HMM E-Value=0.38) 28 7.7
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 7.7
SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 7.7
SB_41428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 28 7.7
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Frame = +3
Query: 306 PHASSYQCPICESTFVNTSDLEVHVNVDHKDILSPQKDDQIDNASCDDI----VMMEESP 473
P A Y+ +C+ + N HKD + P K D DN SCD V + S
Sbjct: 1232 PGACDYRGDMCDKDTDCQMPQKCCFNGCHKDCVKPGKADPCDNVSCDYYAQCQVEDDGST 1291
Query: 474 VSNCPVCC 497
CP+ C
Sbjct: 1292 SCKCPIFC 1299
>SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 978
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 318 SYQCPICESTFVNTSDLEVHVNVDHKDI 401
+YQC C+ F T+D+ HV V H DI
Sbjct: 449 AYQCDHCDMRFSRTNDVTRHVQVAHTDI 476
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNVDH 392
Y+C +C+S F++++DL H+ H
Sbjct: 508 YECDLCDSVFISSADLSNHMRSAH 531
>SB_59700| Best HMM Match : SCP (HMM E-Value=1.6e-14)
Length = 427
Score = 32.3 bits (70), Expect = 0.36
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 306 PHASSYQCPICESTFVNTSDLEVHVNVDHK 395
P +SS QC ICE F S+L H+ V K
Sbjct: 174 PRSSSIQCEICERKFKYLSNLRTHLKVHKK 203
>SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1239
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +3
Query: 285 TMAMSPGPHASSYQCPICESTFVNTSDLEVHVNVDHKD 398
T M H S++CP C TF S L VHV H D
Sbjct: 1101 TFLMHMRLHEGSFKCPKCPMTFPRRSRLAVHVRT-HSD 1137
>SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 615
Score = 31.1 bits (67), Expect = 0.83
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +3
Query: 171 ALRFDITVFECKREC*LRQSDPGLVQPDITLENPTLALTMAMSPGPHASSYQCPICESTF 350
A+ T ++C+ C G ++ I T+ L + S G ++C IC F
Sbjct: 418 AIHVSGTPYKCEY-CGKEFRTKGCIKAHIKYHIGTIVLMSSDSGGGGDKRHKCSICGHAF 476
Query: 351 VNTSDLEVHV 380
V ++DL+ HV
Sbjct: 477 VKSADLKRHV 486
>SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 921
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNVDHKDILSPQKDDQIDN 434
YQCP C+S F L H+ HK Q +DQ ++
Sbjct: 681 YQCPKCDSRFTFHGTLRKHLTRIHKRPEGEQMEDQYND 718
>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
Length = 1771
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 330 PICESTFVNTSDLEVHVNVDHKDILSPQKDDQID 431
P+ + +F+ DLE+ VN ++ PQ+D +ID
Sbjct: 1017 PVDQESFMEPKDLELPVNEPDVEVYEPQQDIEID 1050
>SB_8854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNVDH 392
Y+C IC F+++S+L H+ + H
Sbjct: 279 YKCSICNWKFISSSNLRTHIRIHH 302
>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 907
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNVDHKD 398
+QC +CE F++ +DL H H D
Sbjct: 264 FQCDLCEKAFIDRADLRRHCQRTHSD 289
>SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 757
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 279 ALTMAMSPGPHASSYQCPICESTFVNTSDLEVHVNVDHKD 398
AL + M + CP+C FVN S L VH V ++
Sbjct: 540 ALRVHMMRHDGVKPFSCPLCTQRFVNQSALNVHQKVHSEE 579
>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 935
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNVDHKDILSPQK 416
++CP+C F T +L HV H+ P++
Sbjct: 484 FECPVCHKAFSQTGNLSKHVRYVHEKQQRPKE 515
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNVDHKDILSPQKDDQI 428
++CP C F + S+L HV HK P KD ++
Sbjct: 145 FKCPECGKNFSSGSNLRKHVR-KHKPGYKPYKDKRV 179
>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1741
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNVDHKDILSPQKDDQI--DNASCDDIVMMEESPVSNCPVC 494
+ C C+++F + H+N H+ I++ KD + D M + P +C
Sbjct: 923 FMCKTCQNSFEIKGEFVAHINKQHEGIVATLKDQPLFFDGHGGWVAFEMRDFPNQTLCIC 982
Query: 495 C 497
C
Sbjct: 983 C 983
>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNVDHKD 398
Y+C ICE +F + L +H+ + + D
Sbjct: 545 YRCEICEKSFRDKDSLNIHMRIHNND 570
>SB_42412| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-33)
Length = 644
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Frame = +3
Query: 267 NPTLALTMAMSPGPHAS--SYQCPICESTFVNTSDLEVHV-----NVDHKDILSPQKDDQ 425
N T+A +S AS SY C +CE F + LE H+ N HK P+ Q
Sbjct: 306 NKTVAEARTISTVKDASEKSYDCRVCERVFKSHELLEKHIKNHAENRPHKCPQCPKGFKQ 365
Query: 426 IDNASCDDIVMMEESPVSNCPVC 494
+ + +E P NC VC
Sbjct: 366 PSHLAQHLRTHTDERPF-NCKVC 387
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNVDHKDILSPQKDDQIDNASCDDIVMMEESPVSNCPV-CC 497
Y+C C F + D+ H+ +H D++ ++Q++ C ++ + P+++ P+
Sbjct: 1008 YKCQDCGYYFQSEDDVLNHIKRNHPDLIPLSVEEQVNLQEC---LVTKTVPMTHSPLEQV 1064
Query: 498 QPLPCHNMN*YNILRSILRGVKMVHQ 575
P H + I R+ +G +HQ
Sbjct: 1065 APQQIHVPDQLPIHRNPAQGQVPLHQ 1090
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNVDH---KDILSPQKDDQIDNAS 440
+QC C + F + S L +H+ H K +SP K+ I A+
Sbjct: 2153 HQCEYCATRFASKSSLSLHIRKFHQITKHYISPLKEPVIGRAN 2195
>SB_3590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 28.7 bits (61), Expect = 4.4
Identities = 7/22 (31%), Positives = 15/22 (68%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNV 386
Y+C +C F+ +DL++H+ +
Sbjct: 106 YKCDVCGKCFIQNADLKIHLRI 127
Score = 28.7 bits (61), Expect = 4.4
Identities = 7/22 (31%), Positives = 15/22 (68%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNV 386
Y+C +C F+ +DL++H+ +
Sbjct: 162 YKCDVCGKCFIQNADLKIHLRI 183
>SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)
Length = 595
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 312 ASSYQCPICESTFVNTSDLEVHVNV 386
A Y+CP C F + DL+ H+N+
Sbjct: 488 ARPYRCPYCLKLFRYSGDLKQHINI 512
>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2126
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNV--DHKDILSPQKDDQIDNA--SCDDIVMMEESP 473
++CP+C F+ T L H+ D + LS + D I N D + E SP
Sbjct: 2004 HKCPLCGKGFIQTRYLRSHLKTHKDEQGSLSAEVDSIIQNIKDGPDSPALSENSP 2058
>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 928
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 252 DITLENPTLALTMAMSPGPH--ASSYQCPICESTFVNTSDLEVHVNVDH 392
DI EN ++A H A ++C CE F ++S+L HV + H
Sbjct: 847 DICKENFMYTTSLARHKLIHSGAKPFKCDTCEKAFRSSSELTRHVKLVH 895
>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 309 HASSYQCPICESTFVNTSDLEVHVNVDHKDIL 404
HA +C C+ F +LE HV H D L
Sbjct: 261 HAIKTKCKYCKEGFATHKELETHVLSVHSDAL 292
>SB_21372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 387 DHKDILSPQKDDQIDNASCDDIVMMEESPVSNCPV 491
D DIL+ DD D DD + ++ +S+ PV
Sbjct: 14 DDDDILNSDDDDDDDGGGGDDDIRIDNKEISSIPV 48
>SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26)
Length = 611
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNVDHKDILSPQKDD 422
+ CPIC F+ + L HV H +I +P+K D
Sbjct: 330 FACPICSKRFMRSDHLSKHVKT-HNNI-TPKKAD 361
>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1080
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 324 QCPICESTFVNTSDLEVH 377
+CPIC+ TF S L+VH
Sbjct: 488 KCPICDQTFDTQSGLDVH 505
>SB_48551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 560
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHV 380
Y+CP CE F +S L HV
Sbjct: 409 YKCPYCEKAFTASSILRTHV 428
>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 618
Score = 27.9 bits (59), Expect = 7.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNVDH 392
++C +C+ F+ +S L HV H
Sbjct: 592 FKCTLCDKAFITSSHLRWHVKTQH 615
>SB_25397| Best HMM Match : zf-C2H2 (HMM E-Value=0.38)
Length = 283
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 327 CPICESTFVNTSDLEVHVNVDHKDILSPQKDDQIDNASCD 446
C C++ F + L HV +H ++ S D Q CD
Sbjct: 207 CKFCDTLFYWQAQLRFHVEDEHSELDSSPDDPQGKRNFCD 246
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 27.9 bits (59), Expect = 7.7
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNVDHKD 398
++CP C+ +F ++L+ H+ V K+
Sbjct: 399 FRCPTCQKSFSQDANLKAHLRVHSKE 424
>SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 330
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 321 YQCPICESTFVNTSDLEVHVNVDHKD 398
Y+C +CE F S+L+ H++V H D
Sbjct: 275 YKCALCEKAFNKLSNLKFHMHV-HTD 299
>SB_41428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 332 DLRKYIREHVRSGGPRECGSQGYIKSTERRS 424
D R Y+R R G R +GY++ ++RRS
Sbjct: 17 DRRSYVRGSDRRGYVRGSDRRGYVRGSDRRS 47
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -1
Query: 479 ANWTLFHHDYVIT*RIVYLIVFLWT*YILVI---HIHVDLQIGRVH 351
++W HH +VI IV +I + T +++I H H L I +H
Sbjct: 122 SSWIRRHHGFVIIIIIVIIITIIITIIVIIIIVHHHHHPLSIAIIH 167
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,477,761
Number of Sequences: 59808
Number of extensions: 440200
Number of successful extensions: 1483
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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