Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021736
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    27   0.12 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    27   0.21 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    26   0.28 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.5  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   5.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 321 YQCPICESTFVNTSDLEVHVNVDHKD--ILSPQKDDQID 431
           Y+C +C  TF +   +E+H+   H D  ++   +D  I+
Sbjct: 260 YKCTLCHETFGSKKTMELHIKT-HSDSSVVGSPRDSPIE 297



 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 321 YQCPICESTFVNTSDLEVHVNVDHKDILSPQKDDQIDNA 437
           YQC  C  +F    +L VH  +  K+   P K D  + A
Sbjct: 120 YQCEYCSKSFSVKENLSVHRRIHTKE--RPYKCDVCERA 156



 Score = 25.0 bits (52), Expect = 0.64
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +3

Query: 321 YQCPICESTFVNTSDLEVHV 380
           ++C +C  TF+ +  L +H+
Sbjct: 176 HKCTVCSKTFIQSGQLVIHM 195



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 321 YQCPICESTFVNTSDLEVHVNV 386
           Y+C +CE  F ++  L  H+ +
Sbjct: 148 YKCDVCERAFEHSGKLHRHMRI 169


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 321 YQCPICESTFVNTSDLEVHVNVDHK 395
           Y+C ICE  + + + L  H+   HK
Sbjct: 36  YRCVICERVYCSRNSLMTHIYTYHK 60


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 291 AMSPGPHASSYQCPICESTFVNTSDLEVHV 380
           A + G    S+ C  CE  +V+   L++H+
Sbjct: 7   AAAEGQAKKSFSCKYCEKVYVSLGALKMHI 36


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 434 IVYLIVFLWT*YILVIHIHVDL 369
           I Y+I+  W  + L++ + +DL
Sbjct: 113 IYYIIILAWALFYLLVSLRIDL 134


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 434 IVYLIVFLWT*YILVIHIHVDL 369
           I Y+I+  W  + L++ + +DL
Sbjct: 166 IYYIIILAWALFYLLVSLRIDL 187


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/22 (27%), Positives = 11/22 (50%)
 Frame = +3

Query: 321 YQCPICESTFVNTSDLEVHVNV 386
           ++CP C   F     L+ H+ +
Sbjct: 10  FECPECHKRFTRDHHLKTHMRL 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,403
Number of Sequences: 438
Number of extensions: 3894
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)