Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021736
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43540.1 68418.m05323 zinc finger (C2H2 type) family protein ...    31   0.51 
At2g01650.1 68415.m00091 zinc finger (C2H2 type) family protein ...    31   0.89 
At3g53820.1 68416.m05946 zinc finger (C2H2 type) family protein ...    30   1.2  
At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein ...    29   2.1  
At5g06070.1 68418.m00673 zinc finger (C2H2 type) family protein ...    29   2.7  
At3g04320.1 68416.m00457 trypsin and protease inhibitor family p...    29   2.7  
At3g09290.1 68416.m01103 zinc finger (C2H2 type) family protein ...    29   3.6  
At1g76705.1 68414.m08926 calmodulin-binding family protein conta...    28   4.8  
At1g27730.1 68414.m03389 zinc finger (C2H2 type) family protein ...    28   6.3  
At4g23220.1 68417.m03349 protein kinase family protein contains ...    27   8.3  
At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein ...    27   8.3  

>At5g43540.1 68418.m05323 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 137

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +3

Query: 198 ECKREC*LRQSDPGLVQPDITLENPTLALTMAMSPGPHASSYQCPICESTFVNTSDLEVH 377
           EC+R      S+ G V+   T  +    +T  M        Y+C  C+  F N   L  H
Sbjct: 2   ECERSSSSTSSETGAVRHRRTSSSSVSTVTRRM--------YECTFCKRGFTNAQALGGH 53

Query: 378 VNVDHKDILSPQK 416
           +N+  +D L+  K
Sbjct: 54  MNIHRRDRLNKAK 66


>At2g01650.1 68415.m00091 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 458

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 303 GPHASSYQCPICESTFVNTSDLEVHVNVDHKDILSPQKDDQIDNASCD 446
           G   S ++CPIC++ F +  ++ VHV     D    +   + DN   D
Sbjct: 115 GYSLSMFECPICKNPFTSEEEVSVHVESCLGDTNGDESSFEKDNNDND 162


>At3g53820.1 68416.m05946 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 142

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 303 GPHASSYQCPICESTFVNTSDLEVHVNVDHKD 398
           G  A  Y C  CE  F N   L  H+N+  KD
Sbjct: 15  GSQARPYICEFCERGFSNAQALGGHMNIHRKD 46


>At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 650

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +3

Query: 315 SSYQCPICESTFVNTSDLEVHVNVDHKDILSPQKDDQIDNASCDD 449
           SSY+C ICE +FV +  L  H  + H+  L P+ +   D++S  D
Sbjct: 443 SSYKCSICEKSFVCSQALGSHQRL-HRWKLVPKPEYIEDDSSLLD 486


>At5g06070.1 68418.m00673 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 226

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
 Frame = +3

Query: 318 SYQCPICESTFVNTSDLEVHVNVDHKD-------ILSPQKDDQIDNASCD 446
           SY C  C   F +   L  H+NV  +D        LSP   DQ     CD
Sbjct: 54  SYSCSFCGREFKSAQALGGHMNVHRRDRARLKQQSLSPSSTDQATPPECD 103


>At3g04320.1 68416.m00457 trypsin and protease inhibitor family
           protein / Kunitz family protein weak similarity to
           Kunitz trypsin inhibitor TI1 [Populus tremuloides]
           GI:13605350; contains Pfam profile PF00197: Trypsin and
           protease inhibitor
          Length = 244

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
 Frame = +2

Query: 215 LTQTIRPWACPTRHNPGEPYSGPDNGYVTWTSCFIIPMPDL----------RKYIREHVR 364
           +T     W C  ++   +P S P    +        P P +          R+  +  ++
Sbjct: 90  MTSDYNMWICRMQYGSTDPNSCPQQPLMVTHPNLAAPTPVMFVLANKSDVVRESAKLKIK 149

Query: 365 SGGPRECGSQGYIKSTERRSN 427
             GPR+CG  G+ K  +R S+
Sbjct: 150 FVGPRQCGKSGFWKVVQRNSS 170


>At3g09290.1 68416.m01103 zinc finger (C2H2 type) family protein ;
           contains Pfam profile: PF00096 Zinc finger, C2H2 type
          Length = 172

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
 Frame = +3

Query: 318 SYQCPICESTFVNTSDLEVHVNVDHKD-------ILSPQKDDQIDNASCDDIVMME 464
           SY C  C   F N   L  H+N+  +D       ++   KDD +  +   ++V ++
Sbjct: 34  SYVCSFCIRGFSNAQALGGHMNIHRRDRAKLRQKLMEDNKDDVVAESDASEVVSLD 89


>At1g76705.1 68414.m08926 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 145

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 269 VLQGYVGLDKPRVGLSELAFAFAFKDGDVKSKCARFICSSS 147
           +L+  +   + RVGL +  F    KDGD  S    F+C +S
Sbjct: 88  MLEDSLSTPRQRVGLMDSLFVNYKKDGDKVSLWTSFVCENS 128


>At1g27730.1 68414.m03389 zinc finger (C2H2 type) family protein
           (ZAT10) / salt-tolerance zinc finger protein (STZ)
           identical to salt-tolerance zinc finger protein
           GB:CAA64820 GI:1565227 from [Arabidopsis thaliana];
           contains Pfam domain, PF00096: Zinc finger, C2H2 type;
           identical to cDNA  zinc finger protein STZ/ZAT10
           (STZ/ZAT10)  GI:9965730
          Length = 227

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +3

Query: 300 PGPHASSYQCPICESTFVNTSDLEVHVNVDHKDI---LSPQKDDQIDNASCDDIVMMEES 470
           P     SY+C +C+ TF +   L  H     K++   LS   DD   +++     +   S
Sbjct: 73  PAVEKLSYKCSVCDKTFSSYQALGGHKASHRKNLSQTLSGGGDDHSTSSATTTSAVTTGS 132

Query: 471 PVSN-CPVCCQPLP 509
             S+ C +C +  P
Sbjct: 133 GKSHVCTICNKSFP 146


>At4g23220.1 68417.m03349 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 542

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 528 YNILRSILRGVKMVHQD 578
           YNI+R I RG+  +HQD
Sbjct: 320 YNIIRGITRGILYLHQD 336


>At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 907

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 315 SSYQCPICESTFVNTSDLEVHVNVDH 392
           S + C IC  +FV    LE+HV   H
Sbjct: 494 SGFACAICLDSFVRRKLLEIHVEERH 519


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,968,587
Number of Sequences: 28952
Number of extensions: 288600
Number of successful extensions: 831
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)