Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021735
         (716 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    28   0.066
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   1.9  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 0.066
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
 Frame = +3

Query: 117 IHSKNGCKCIFYERYVRKSIAA*YASVGE*LSPVKLCE-DRRVVYRCAYCQFMDMLFPG- 290
           ++S  GCK  F++R VRK ++  YA   E     K C  D+R   RC YC++   L  G 
Sbjct: 100 VYSCEGCKG-FFKRTVRKDLS--YACREE-----KNCIIDKRQRNRCQYCRYQKCLNMGM 151

Query: 291 ---SVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVK 422
              +V  +R + K     E +++   LQA    M +++I+  +K V+
Sbjct: 152 KREAVQEERQRTKDRDTSE-VESTSNLQA---DMPLERIIEAEKRVE 194


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 476 VKEFLEPLQKLKIILET-TLHQFVNGYYLVHTHLF 375
           +K F+  +  L I+  + TLH   N Y    TH+F
Sbjct: 41  LKYFIIAIYVLTILTSSVTLHVCFNSYMYAFTHIF 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,647
Number of Sequences: 336
Number of extensions: 4244
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)