Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021735
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    89   6e-19
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    29   0.50 
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    27   3.5  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   6.2  
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    25   8.2  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.2  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    25   8.2  

>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 89.0 bits (211), Expect = 6e-19
 Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 2/131 (1%)
 Frame = +3

Query: 255 AYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQ 434
           A  Q  D ++   +P+K++ F+ N E++YI N+K+LQ  F K G+DK+V  ++L + + Q
Sbjct: 31  AMIQIFDSIYQ-DIPLKKVNFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCKMQ 89

Query: 435 DNFEFLQWFKKFFDANYGGAAYDAVRRR--RSAHGARGLGRPEGRCR*ETRRPCRQSRS* 608
           DN EF+QW K+F+D  Y G  YDA+ RR  R     R +    G      RR    S S 
Sbjct: 90  DNLEFVQWAKRFWDQYYPGGDYDALARRGNRGPANTRVMNSSAGATGPSRRRQV-SSGSS 148

Query: 609 TPNHWES*YNS 641
           TP+  +S  N+
Sbjct: 149 TPSMTKSSANN 159


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 297 PMKRIKFKTNLEHEYIQNFKILQAGFK 377
           P KR+K KT L+HE+     + ++GF+
Sbjct: 388 PSKRVKAKTALQHEFFNACGVTRSGFE 414


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 2   NEVSVLDKNSNKFDNLSHTAKLFR 73
           NE + + K SN  DNL+ +++LFR
Sbjct: 266 NEHTEVQKKSNSIDNLTPSSELFR 289


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 312 KFKTNLEHEYIQNFKILQAGFK 377
           K  TNLE+EY   +KI+Q  FK
Sbjct: 748 KSSTNLENEYQTPWKIIQNPFK 769


>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 143 TFTAIFTMYQPLIKKFLTV 87
           TF A FT Y PL+ +FL V
Sbjct: 45  TFMAPFTPYMPLLGRFLIV 63


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 292 VYQ*KESNLRQIWNMNIYRTLKYYKLVL 375
           ++Q   S LR I N+N+Y+   + KL++
Sbjct: 654 IFQIHASQLRYIDNLNVYKNWAFRKLLI 681


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 518 SPAHCVICRTSIVGVKEFLEPLQKLKIILETTL-HQFVNGYYLVHTH 381
           SP   + C++ + G  E    L  L  I +    HQF +GY+ +H H
Sbjct: 38  SPKEEINCQSLLQG-PELKTALDNLNFIHKQKFEHQFRHGYWKLHPH 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,072,902
Number of Sequences: 5004
Number of extensions: 66500
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)