Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021735
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)             130   1e-30
SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)                       33   0.18 
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_57234| Best HMM Match : Phage_fiber (HMM E-Value=4.5e-08)           28   6.6  
SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)              28   8.7  
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)                      28   8.7  

>SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score =  130 bits (314), Expect = 1e-30
 Identities = 59/85 (69%), Positives = 66/85 (77%)
 Frame = +3

Query: 294 VPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFF 473
           VP+K++KF    EHEYI NFKILQ+ FKK G DKI+P+DKLVKGRFQDNFEFLQWFKKFF
Sbjct: 43  VPLKKVKFGAKQEHEYIANFKILQSAFKKCGCDKIIPVDKLVKGRFQDNFEFLQWFKKFF 102

Query: 474 DANYGGAAYDAVRRRRSAHGARGLG 548
           DANYGG  Y+AV  R   HG    G
Sbjct: 103 DANYGGQEYNAVEAR---HGQTDAG 124


>SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)
          Length = 404

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 545 EPPCPMGRPSPAHCVICRTSIVGVKEFLE--PLQKLKIILETTLHQFVNG 402
           E P P    +PA  + C T+I GVKEFL   P +K    L+  L Q+  G
Sbjct: 290 EGPRPSQGHNPAGILRCPTAIPGVKEFLNSVPAKKCTARLDLALQQYEKG 339


>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 417  VKGRFQDNFEFLQWFKKFFDANYGGAAYD 503
            V  + +DNF  +QW K F D  Y  + +D
Sbjct: 1775 VSKQMKDNFPCMQWTKNFLDNAYSTSEHD 1803


>SB_57234| Best HMM Match : Phage_fiber (HMM E-Value=4.5e-08)
          Length = 355

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 410 VNGYYLVHTHLFKTSL*YFKVLYIFMFQICLKFDSFHWYTAREQHVHELAI-GAPVHNSS 234
           + G +L +  +    L Y  +    +  + ++ D  H+   R  H+H LAI G  +HN +
Sbjct: 213 IRGDHLHYLAIRGDHLHYLAIRGDHLHYLAIRGDHLHYLAIRGDHLHNLAIRGDHLHNLA 272

Query: 233 I 231
           I
Sbjct: 273 I 273



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 410 VNGYYLVHTHLFKTSL*YFKVLYIFMFQICLKFDSFHWYTAREQHVHELAI-GAPVHNSS 234
           + G +L +  +    L Y  +    +  + ++ D  H+   R  H+H LAI G  +HN +
Sbjct: 23  IRGDHLHNLAIRGDQLHYLAIRGDHLHNLAIRGDHLHYLAIRGDHLHNLAIKGDHLHNLA 82

Query: 233 I 231
           +
Sbjct: 83  L 83


>SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)
          Length = 749

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
 Frame = -3

Query: 648 RSDCCISFPN---------GLGSSCDFGDRGDGFLSGS 562
           R+D C+S PN         G+G +CD    GDG   GS
Sbjct: 509 RADNCVSVPNADQVDTDSDGIGDACDSDTDGDGVSDGS 546


>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
          Length = 401

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 172 LSRHDMLAWVNDCLQSNFAKIEELCTGAPIASSWTCCSL 288
           L   D+L W++     + AK +  C       +WT CSL
Sbjct: 47  LENVDVLMWIHSSAAKSLAKTKLRCLRLSWKQAWTPCSL 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,820,134
Number of Sequences: 59808
Number of extensions: 492889
Number of successful extensions: 1171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)