Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021735
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...   122   3e-28
AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical ...    84   1e-16
U64849-4|AAC48054.2|  217|Caenorhabditis elegans Saposin-like pr...    31   1.1  
Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81147-8|CAB03537.1|  338|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z36237-1|CAA85271.2|  619|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U13076-1|AAA96984.1|  463|Caenorhabditis elegans steroid hormone...    28   7.7  
AY204167-1|AAO39171.1|  619|Caenorhabditis elegans nuclear recep...    28   7.7  
AF273770-1|AAG15119.1|  469|Caenorhabditis elegans nuclear recep...    28   7.7  
AF083224-1|AAD03682.1|  619|Caenorhabditis elegans nuclear recep...    28   7.7  

>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score =  122 bits (293), Expect = 3e-28
 Identities = 47/87 (54%), Positives = 69/87 (79%)
 Frame = +3

Query: 258 YCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQD 437
           YC F D LFP S+ +K++K+ + LE +++ N+K++Q  +K +GV+K++P+DKL+KG+FQD
Sbjct: 47  YCLFTDFLFPDSIQLKKVKWNSRLELDWLSNWKLVQTTWKNLGVEKVIPVDKLIKGKFQD 106

Query: 438 NFEFLQWFKKFFDANYGGAAYDAVRRR 518
           NFEFLQWFKK FDANY G  YD ++ R
Sbjct: 107 NFEFLQWFKKLFDANYDGHEYDPMQAR 133



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 27/40 (67%), Positives = 35/40 (87%)
 Frame = +1

Query: 136 VNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEELCTGA 255
           VNVY+T  +++NLSRH+ML WVNDCLQ++F KIE+L TGA
Sbjct: 6   VNVYTTASSADNLSRHEMLMWVNDCLQAHFTKIEQLHTGA 45


>AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical
           protein VW02B12L.3 protein.
          Length = 299

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 39/90 (43%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
 Frame = +3

Query: 255 AYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQ 434
           AYCQ   +LF  ++ +K++KF    E + + N+K+L   +K +G+DK V ++K+ K +FQ
Sbjct: 43  AYCQLTHLLF-NAINLKKVKFNPRSEPDVLNNWKVLTTTWKDLGIDKPVDVEKMKKAKFQ 101

Query: 435 DNFEFLQWFKKFFDANY--GGAAYDAVRRR 518
           DN EFLQWF KF++AN       YDAV  R
Sbjct: 102 DNMEFLQWFYKFYNANLTTEPEEYDAVGAR 131



 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 21/42 (50%), Positives = 33/42 (78%)
 Frame = +1

Query: 130 MAVNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEELCTGA 255
           M VNV+ + VT++ LSR + +AWVN+ L+S+F K+EE+ +GA
Sbjct: 1   MVVNVFISAVTTDTLSRKEAVAWVNNLLKSHFTKVEEMASGA 42


>U64849-4|AAC48054.2|  217|Caenorhabditis elegans Saposin-like
           protein family protein20 protein.
          Length = 217

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 503 VICRTSIVGVKEFLEPLQKLKIILETTLHQFVN 405
           +IC      V  FL P++K+++I +T L  FVN
Sbjct: 136 IICTNCQSAVNAFLAPIKKVELITKTELTDFVN 168


>Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical
           protein W07G1.2 protein.
          Length = 363

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -1

Query: 485 IVGVKEFLEPLQKLKIILETTLHQFVNGYYLVHTHLFKTSL*YFKVLYIFMFQICLKFDS 306
           ++G   +   L    ++ +  L  F +  YL+   +F   + YF +   +   ICLK   
Sbjct: 4   LIGNSSYFRVLTPTTVLHDHRLRGFPDNIYLIVYGIFHLLIMYFVLKCAY---ICLKIRV 60

Query: 305 FHW 297
           FHW
Sbjct: 61  FHW 63


>Z81147-8|CAB03537.1|  338|Caenorhabditis elegans Hypothetical
           protein T09E11.10 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +3

Query: 270 MDMLFPGSVPMKR-IKFKTNL---EHEYIQNFKILQAGFKK 380
           M M+F G  P K  I F +++   +HEY++ ++I  A FK+
Sbjct: 288 MTMMFMGYEPTKEPILFSSHIPLKDHEYLEQYRIQMADFKE 328


>U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical
           protein F41C3.6 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 467 FLEPLQKLKIILETTLHQFVNGYYLVHTHLFKTSL*YFKVLY 342
           F+E L+ LK +L++ LH   N Y+L H  +   S   F +LY
Sbjct: 21  FVE-LRSLKNLLKSILHNIENDYFLAHQKVRLYSSHNFVMLY 61


>Z36237-1|CAA85271.2|  619|Caenorhabditis elegans Hypothetical
           protein C48D5.1 protein.
          Length = 619

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 132 GCKCIFYERYVRKSIAA*YASVGE*LSPVKLCEDRRVVYRCAYCQFMDMLFPGSV 296
           GCK  F++R V+K+    Y   G    P+    D+R   RC YC++   L  G V
Sbjct: 287 GCKG-FFKRTVQKNSK--YTCAGNKTCPI----DKRYRSRCQYCRYQKCLEVGMV 334


>U13076-1|AAA96984.1|  463|Caenorhabditis elegans steroid hormone
           receptor familymember CNR8 protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 132 GCKCIFYERYVRKSIAA*YASVGE*LSPVKLCEDRRVVYRCAYCQFMDMLFPGSV 296
           GCK  F++R V+K+    Y   G    P+    D+R   RC YC++   L  G V
Sbjct: 131 GCKG-FFKRTVQKNSK--YTCAGNKTCPI----DKRYRSRCQYCRYQKCLEVGMV 178


>AY204167-1|AAO39171.1|  619|Caenorhabditis elegans nuclear receptor
           NHR-6 protein.
          Length = 619

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 132 GCKCIFYERYVRKSIAA*YASVGE*LSPVKLCEDRRVVYRCAYCQFMDMLFPGSV 296
           GCK  F++R V+K+    Y   G    P+    D+R   RC YC++   L  G V
Sbjct: 287 GCKG-FFKRTVQKNSK--YTCAGNKTCPI----DKRYRSRCQYCRYQKCLEVGMV 334


>AF273770-1|AAG15119.1|  469|Caenorhabditis elegans nuclear receptor
           NHR-6 protein.
          Length = 469

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 132 GCKCIFYERYVRKSIAA*YASVGE*LSPVKLCEDRRVVYRCAYCQFMDMLFPGSV 296
           GCK  F++R V+K+    Y   G    P+    D+R   RC YC++   L  G V
Sbjct: 137 GCKG-FFKRTVQKNSK--YTCAGNKTCPI----DKRYRSRCQYCRYQKCLEVGMV 184


>AF083224-1|AAD03682.1|  619|Caenorhabditis elegans nuclear receptor
           NHR-6 protein.
          Length = 619

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 132 GCKCIFYERYVRKSIAA*YASVGE*LSPVKLCEDRRVVYRCAYCQFMDMLFPGSV 296
           GCK  F++R V+K+    Y   G    P+    D+R   RC YC++   L  G V
Sbjct: 287 GCKG-FFKRTVQKNSK--YTCAGNKTCPI----DKRYRSRCQYCRYQKCLEVGMV 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,166,867
Number of Sequences: 27780
Number of extensions: 383219
Number of successful extensions: 1072
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)