Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021735
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    29   0.044
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    29   0.044
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    28   0.10 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.8  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   8.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.8  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 0.044
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
 Frame = +3

Query: 117 IHSKNGCKCIFYERYVRKSIAA*YASVGE*LSPVKLCE-DRRVVYRCAYCQFMDMLFPG- 290
           ++S  GCK  F++R VRK ++  YA   E     K C  D+R   RC YC++   L  G 
Sbjct: 124 VYSCEGCKG-FFKRTVRKDLS--YACREE-----KSCIIDKRQRNRCQYCRYQKCLAMGM 175

Query: 291 ---SVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRF--QDNFE 446
              +V  +R + K   + E +++   L +    M +++I+  +K V+ +   Q N+E
Sbjct: 176 KREAVQEERQRTKERDQSE-VESTSSLHS---DMPIERILEAEKRVECKMEQQGNYE 228


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 0.044
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
 Frame = +3

Query: 117 IHSKNGCKCIFYERYVRKSIAA*YASVGE*LSPVKLCE-DRRVVYRCAYCQFMDMLFPG- 290
           ++S  GCK  F++R VRK ++  YA   E     K C  D+R   RC YC++   L  G 
Sbjct: 124 VYSCEGCKG-FFKRTVRKDLS--YACREE-----KSCIIDKRQRNRCQYCRYQKCLAMGM 175

Query: 291 ---SVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRF--QDNFE 446
              +V  +R + K   + E +++   L +    M +++I+  +K V+ +   Q N+E
Sbjct: 176 KREAVQEERQRTKERDQSE-VESTSSLHS---DMPIERILEAEKRVECKMEQQGNYE 228


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = -2

Query: 415 SLSMGTILSTPIFLKPACNILKFCIYSCSKFVLNLILFIGTLPGNSMSMNWQ*AHLYTTL 236
           SL +G ++ T  F     +I    I S +   + ++L    LP N +S+ +    +   +
Sbjct: 418 SLGIGEVI-TVSFTATLASIGAASIPSAALITMLIVLTALGLPTNDISLLFAVDWMLDRI 476

Query: 235 RSSQSLTGDNHSPTLAYH 182
           R+S ++ GD +   + YH
Sbjct: 477 RTSINVLGDGYGAGIVYH 494


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 633 ISFPNGLGSSCDFGDRGDG 577
           +SF +  GS   F + GDG
Sbjct: 378 VSFIDAAGSEVKFDEHGDG 396


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 166 ENLSRHDMLAWVNDC 210
           +NL+++ M+ W  DC
Sbjct: 13  KNLNQNQMMIWALDC 27


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 633 ISFPNGLGSSCDFGDRGDG 577
           +SF +  GS   F + GDG
Sbjct: 468 VSFIDAAGSEVKFDEHGDG 486


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 250 LYTTLRSSQSLTGDNH 203
           LY+  RSS+SLT   H
Sbjct: 53  LYSGTRSSESLTAQAH 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,529
Number of Sequences: 438
Number of extensions: 4422
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)