Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021734
         (716 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       23   2.5  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   2.5  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.3  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   5.7  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   5.7  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   5.7  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   7.6  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   7.6  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 406 DQQTDGQIHRQHHE 447
           +QQT   IH+ HH+
Sbjct: 97  EQQTHSSIHQHHHD 110


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 406 DQQTDGQIHRQHHE 447
           +QQT   IH+ HH+
Sbjct: 248 EQQTHSSIHQHHHD 261


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 406 DQQTDGQIHRQHHE 447
           +QQT   IH+ HH+
Sbjct: 307 EQQTHSSIHQHHHD 320


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 71  RRIPNNYRWIFRFNHDYIFVI 9
           +RIP++YR  FR    Y+ ++
Sbjct: 233 KRIPHDYRKRFRMEKIYVALV 253


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 688 ACADPKPDCRAGCPGSRGSSRL 623
           A   P P  R+ C GS  SS L
Sbjct: 227 ALESPNPASRSSCLGSNTSSML 248


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 688 ACADPKPDCRAGCPGSRGSSRL 623
           A   P P  R+ C GS  SS L
Sbjct: 16  ALESPNPASRSSCLGSNTSSML 37


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 688 ACADPKPDCRAGCPGSRGSSRL 623
           A   P P  R+ C GS  SS L
Sbjct: 16  ALESPNPASRSSCLGSNTSSML 37


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 561 GARYRPYLMSHQFHVLNWHDSTGAAVLTTEASTS 460
           GAR+    +S    V   +D T   V+T EAS S
Sbjct: 177 GARHGLETLSQLMDVYPNNDGTKCLVVTDEASIS 210


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 688 ACADPKPDCRAGCPGSRGSSRL 623
           A   P P  R+ C GS  SS L
Sbjct: 227 ALESPDPASRSSCLGSNTSSML 248


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,412
Number of Sequences: 336
Number of extensions: 3070
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)