Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021734
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    72   7e-14
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    27   2.7  
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    27   2.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.5  

>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
 Frame = +2

Query: 200 EYENDPIVRGTS*QG--LH*FENLSIKMDGQTVWVRARLQTSRAKG-KQCFAVLRQTSST 370
           +Y + P+ R T+  G       ++S K DGQTV +RAR+ TSR +G K CF  LRQ   T
Sbjct: 75  KYGDLPLNRSTARPGRTYTQISDISAKNDGQTVLLRARVYTSRLQGNKMCFFSLRQKYDT 134

Query: 371 VQLLVSVNEQRKISKQMVKFTGNITRESIVDVEASVVRTAAPVESCQLR 517
           +Q L  VN+   ISKQMVK+ G+I+ ESIV VE  V ++   ++S  ++
Sbjct: 135 IQALAVVNKDT-ISKQMVKWCGSISLESIVLVEGIVKKSPEIIKSATVQ 182



 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 8/76 (10%)
 Frame = +1

Query: 511 IKDVELVAHQIWTVSSARSQLPLQIEDAARPEK--------SDEPEALKIRVNQDTRLDN 666
           ++D E+    I+ +S  +  LP  +EDA R E+        + E ++  +RVN DTRLDN
Sbjct: 181 VQDAEIHISSIYVISPIKKNLPFLVEDAGRSEEQIRESEENAAEGDSKFVRVNLDTRLDN 240

Query: 667 RVLDLRTPANQAVFRI 714
           RVLDLRTP NQA+F I
Sbjct: 241 RVLDLRTPTNQAIFDI 256


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 361 GLPQHSKALLAFSSRSLQTGSNP 293
           G+P HS+ LL ++ +S+Q G  P
Sbjct: 224 GIPGHSEQLLDYNKQSIQLGLRP 246


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/69 (21%), Positives = 34/69 (49%)
 Frame = +2

Query: 305 RLQTSRAKGKQCFAVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNITRESIVDVEASVVR 484
           R+Q +   G+Q   +L+     + L++   E++  + +  K TG I +  +V V  + + 
Sbjct: 35  RIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLV 94

Query: 485 TAAPVESCQ 511
             AP++  +
Sbjct: 95  LIAPMDGSE 103


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = -2

Query: 691  PACADPKPDCRAGCPGSRGSSRLPAHHSSPVWPRPRSAEEAGIWRSIPSISDEPPVPRP 515
            P+ A P P   +  P  + SS  P+  + P  P P S        SIP+ S  PPVP P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPS--APPPVPAPSSEIP-----SIPAPSGAPPVPAP 1088



 Score = 26.2 bits (55), Expect = 4.7
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -2

Query: 691  PACADPKPDCRAGCPG----SRGSSRLPAHHSSPVWPRPRSAEEAGIWRSIPSISDEPPV 524
            P+ A P     +G P     S  +  +PA  SS + P P+ A  AG+   +P  S+ PPV
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAP-SSGIPPVPKPA--AGV-PPVPPPSEAPPV 1200

Query: 523  PRP 515
            P+P
Sbjct: 1201 PKP 1203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,309
Number of Sequences: 5004
Number of extensions: 52600
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)