Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021734
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 64 8e-11
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 64 1e-10
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 33 0.30
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 31 1.2
05_01_0131 + 888247-888771,889092-889154 30 1.6
05_05_0142 - 22673607-22674134 30 2.1
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 29 2.8
05_03_0435 - 14000891-14001379,14001429-14001563 29 3.7
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 29 4.9
08_01_1017 - 10284284-10284447,10285887-10286186,10286340-10286478 29 4.9
06_03_0190 - 17708513-17708548,17708897-17709295 29 4.9
06_02_0152 - 12316242-12316248,12316634-12316800,12317689-123178... 29 4.9
04_04_0057 + 22410167-22411330 29 4.9
06_01_0540 - 3871347-3872072,3872784-3872997,3873088-3873320,387... 28 6.4
06_01_0530 - 3833291-3834016,3834728-3834941,3835032-3835264,383... 28 6.4
04_03_0803 - 19835284-19836050,19836337-19836418 28 8.5
04_01_0253 - 3358090-3359052 28 8.5
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 64.5 bits (150), Expect = 8e-11
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Frame = +1
Query: 514 KDVELVAHQIWTVSSARSQLPLQIEDAARPE----KSDEPEALKIRVNQDTRLDNRVLDL 681
+ VE+ +I+ ++ A LP+ +EDA+R E K+++ +RV QDTRL+ R +DL
Sbjct: 176 QQVEIQVRKIYCINRAIPTLPINLEDASRSEAEIEKAEQAGEKLVRVGQDTRLNYRAIDL 235
Query: 682 RTPANQAVFRI 714
RTPANQA+FRI
Sbjct: 236 RTPANQAIFRI 246
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = +2
Query: 281 GQTVWVRARLQTSRAKGKQ-CFAVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNITRESI 457
G++V +R Q R K+ F VLR++ STVQ ++ + +S QMV+F ++++ESI
Sbjct: 98 GRSVLIRGAAQAIRPVSKKMAFVVLRESMSTVQCVLVASADAGVSTQMVRFATSLSKESI 157
Query: 458 VDVEASVVRTAAPVES 505
VDVE V P+++
Sbjct: 158 VDVEGVVSLPKEPLKA 173
>02_01_0316 +
2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 64.1 bits (149), Expect = 1e-10
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Frame = +1
Query: 493 PSRIVPIKDVELVAHQIWTVSSARSQLPLQIEDAARPE----KSDEPEALKIRVNQDTRL 660
P R ++VE+ +++ +S A LP+ ++DAAR E K+ + V QD RL
Sbjct: 128 PVRGTTQQEVEIQVKKLYCISKATPNLPISVDDAARSEEDVVKAKAAGEQLVHVGQDKRL 187
Query: 661 DNRVLDLRTPANQAVFRI 714
D RV+DLRTPANQA+FR+
Sbjct: 188 DFRVIDLRTPANQAIFRV 205
Score = 37.5 bits (83), Expect = 0.011
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +2
Query: 281 GQTVWVRARLQTSRAKGKQ-CFAVLRQTSSTVQLLVSVNEQRKISKQ--MVKFTGNITRE 451
G+ V VR RA G++ F VLRQ SSTVQ +V + +F ++RE
Sbjct: 54 GRAVRVRGAAHAVRAVGRRVAFLVLRQGSSTVQCVVGGGGGGGGGGDAGVARFAAGLSRE 113
Query: 452 SIVDVEASVVRTAAPV 499
S+VDV V PV
Sbjct: 114 SVVDVAGVVSLPREPV 129
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2
Query: 595 PRPRSAEEAGIWRSIPSISDEPPVP 521
P PRS E+ + R++PS++ +PPVP
Sbjct: 610 PVPRSPSESWLSRTLPSVTSKPPVP 634
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -2
Query: 658 AGCPGSRGSSRLPAHHSSPVWPRPRSAEEAGIWRSIPSISDEPPVPRP 515
+G P S+ S+R P S + ++A+E+G W+S+P E P P
Sbjct: 53 SGSP-SKDSNRSPPPPSKKKKKKKKAADESGRWKSVPPGMRESAAPVP 99
>05_01_0131 + 888247-888771,889092-889154
Length = 195
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = -2
Query: 691 PACADPKPDCRAGCPGSRGSSRLPAHHSSPVWPRPRSAEEAGIWRSIPS----ISDEPPV 524
P +DP P + P R P +S P P E + R +PS I+ +PP
Sbjct: 103 PITSDPPPPPLSEFPVLREVPSGPDPITSDPPPPPPPLSEFPVLREVPSGPDPITSDPPP 162
Query: 523 PRP*LARFDWGGRPHDRSLHV 461
P P L F + H ++L +
Sbjct: 163 PPPPLTEFPILRKVHHKALGI 183
>05_05_0142 - 22673607-22674134
Length = 175
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Frame = +3
Query: 402 GRSANRWSNSPATSRESR*STWRLRS*G--RPPQSNRAN*GRGTGGSSDMDGIERQIPAS 575
GR RW A +R R WR R G + + G G GG ++G
Sbjct: 96 GRGRGRWRGRAAYTRGRRGRRWRGRGGGGEEGVEGSGEGGGEGGGGEEGVEGDGEGGEGG 155
Query: 576 SADRGRGQTGE 608
D G G GE
Sbjct: 156 GFDGGEGGGGE 166
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +1
Query: 520 VELVAHQIWTVSSARSQLPLQIEDAARPEKSDEPEALKIRVNQDTRLDNRVLDLRTPANQ 699
+E+ A I+ ++S LP I A + +K + ++ RL RVLDLR P Q
Sbjct: 178 IEVAADNIYVLNSVTRSLPFPITTA---------DTVKEKFPEEIRLRFRVLDLRRPQMQ 228
Query: 700 AVFRI 714
+ R+
Sbjct: 229 SNLRL 233
>05_03_0435 - 14000891-14001379,14001429-14001563
Length = 207
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +3
Query: 396 SNGRS-ANRWSNSPATSRESR*STWRLRS*GRPPQSNRAN*GRG-TGGSSDMDGIERQIP 569
S RS N W +SPA + +T L ++R G G GGS+D+DG RQ
Sbjct: 70 SQSRSDRNHWRSSPAQRQALVKATPLLARCAADNGASRGRGGGGLAGGSADVDGGTRQGR 129
Query: 570 ASSADRGRG 596
+ RG
Sbjct: 130 GGQLEAARG 138
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 703 RPG*PACADPKPDCRAGC-PGSRGSSRLPAHHSSPVWPRPRSAEEAGIWRSIPSISDEPP 527
RPG + P+ G P + G LPA ++P P P+ EA + R +P +S +P
Sbjct: 1098 RPG-KEQGEEAPEPNGGLRPLTTGVGPLPAFPTTPGAPDPQDGPEATVGR-LPLLSSDPE 1155
Query: 526 V 524
V
Sbjct: 1156 V 1156
>08_01_1017 - 10284284-10284447,10285887-10286186,10286340-10286478
Length = 200
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -3
Query: 624 FRLITLLRSGRVLDLQRKLG-SGARYRPYLMSHQFHVLNWHDSTGAAVLTTEASTST 457
F L+TL D +R +GAR RP+L + HV + AA T+ T +
Sbjct: 11 FLLLTLASQATWCDAERSHAINGARLRPHLQFEELHVTDGKKLGQAADTDTDTDTES 67
>06_03_0190 - 17708513-17708548,17708897-17709295
Length = 144
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 512 LRTWNWWLIRYGRYRAPDPSFLCRSRTRP 598
+R W W R R P PS RSR RP
Sbjct: 1 MRRWRGWRGHRRRSRGPPPSRTSRSRLRP 29
>06_02_0152 -
12316242-12316248,12316634-12316800,12317689-12317800,
12317930-12317999,12318535-12318535,12318791-12319144
Length = 236
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/51 (27%), Positives = 20/51 (39%)
Frame = -2
Query: 670 PDCRAGCPGSRGSSRLPAHHSSPVWPRPRSAEEAGIWRSIPSISDEPPVPR 518
P A PGS S P P P + +WR++ S+ + P R
Sbjct: 38 PATDAATPGSDSSYPTPTSIPPPPTSLPSTPTPVAVWRTVASVDNASPPSR 88
>04_04_0057 + 22410167-22411330
Length = 387
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = -2
Query: 691 PACADPKPDCRAGCPGSRGSSRLPAHHSSPVWPRPRSAEEAGIWRSIPSISDEPPVPRP 515
P C DP + R CP R + P P P P +A + P PP P P
Sbjct: 158 PECIDPWLESRVTCPLCRANLEKP---PPPPPPPPAAAAASPSPERSPRCQPSPPPPPP 213
>06_01_0540 -
3871347-3872072,3872784-3872997,3873088-3873320,
3873409-3873561
Length = 441
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -2
Query: 544 ISDEPPVPRP*LARFDWGGRPHDRSLHVDYRLSRDVA 434
+S PP PRP LA F G H R L + + RD A
Sbjct: 251 LSPAPPPPRPFLAFFAGGRHGHVRDLLLRHWKGRDPA 287
>06_01_0530 -
3833291-3834016,3834728-3834941,3835032-3835264,
3835353-3835505
Length = 441
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -2
Query: 544 ISDEPPVPRP*LARFDWGGRPHDRSLHVDYRLSRDVA 434
+S PP PRP LA F G H R L + + RD A
Sbjct: 251 LSPAPPPPRPFLAFFAGGRHGHVRDLLLRHWKGRDPA 287
>04_03_0803 - 19835284-19836050,19836337-19836418
Length = 282
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 601 VWPRPRSAEEAGIWRSIPSISDEPP 527
VWP P+ E AG P++++ PP
Sbjct: 76 VWPPPKKPETAGGTTPAPAVANPPP 100
>04_01_0253 - 3358090-3359052
Length = 320
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Frame = +3
Query: 399 NGRSANRWSNSPATSRESR*STWRLRS*GRPPQSNRAN*GRGTGGSSDMDGIE-----RQ 563
+G A R A E R R R+ G RA GRG GGS D G + R
Sbjct: 223 DGARARRERRLEAAGAEKREGRRRERASGDHRAKRRA--GRGGGGSGDAGGGDGAAGRRT 280
Query: 564 IPASSADRGRGQTGEE 611
+ A+ A G Q G E
Sbjct: 281 VEAAQAAGGGRQRGRE 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,005,945
Number of Sequences: 37544
Number of extensions: 414967
Number of successful extensions: 1548
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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