Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021734
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23545| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_8818| Best HMM Match : I-set (HMM E-Value=0)                        29   2.8  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.8  
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)                   28   6.6  
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                28   6.6  
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               28   8.7  
SB_40170| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_23545| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 35

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +2

Query: 332 KQCFAVLRQTSSTVQLLVSVNEQRKISKQMVKF 430
           KQCF  LR    TVQ L + ++   +SK MVKF
Sbjct: 2   KQCFMTLRDRQYTVQALCAASD--VVSKHMVKF 32


>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2787

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +1

Query: 550 VSSARSQLPLQIEDAARPEKSDEPEALKIRVNQDTRLDNRVLDLRTP 690
           + S +S+  ++I    RP+ + + + +++   Q+ RLD RV+   TP
Sbjct: 709 IGSVKSETRVRITALVRPDFTKKLKPVEVEEGQEARLDVRVVGTPTP 755


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 371  VQLLVSVNEQRKISKQMVK-FTGNITRESIVDVEASVVRTAAPVESCQLRTWNWWLIRYG 547
            +  +VS ++  +  KQ  K F+GN  R ++V  E   +RTA  +     R + W  +R  
Sbjct: 4250 ISYVVSFSKDGRSFKQYNKLFSGNTDRSTVVYKELPKLRTAVAMRFLPRRWYGWICMRVE 4309

Query: 548  RY 553
             Y
Sbjct: 4310 VY 4311


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/72 (22%), Positives = 35/72 (48%)
 Frame = +2

Query: 296  VRARLQTSRAKGKQCFAVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNITRESIVDVEAS 475
            V + ++ + A  ++  A + +  + V+  V+  E+ ++  +  +     T   + D EAS
Sbjct: 1142 VESSVEEAEAPEEEVKAPVEEVEAPVEEAVASVEEAEVPIEEAETQAEDTEGPVEDAEAS 1201

Query: 476  VVRTAAPVESCQ 511
            V +  APVE  +
Sbjct: 1202 VQKAEAPVEETE 1213


>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
          Length = 1052

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 376  AAG*R*RATEDQQTDGQIHRQHHERVDSRRGGFG 477
            AAG   RA ED      I +Q+ ++ D +RGG G
Sbjct: 936  AAGHARRACEDDGNAKSIRKQYRKKPDQKRGGGG 969


>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 406 DQQTDGQIHRQHHERVDSRRGGFGREDGRP--SRIVPIKDVELVAH 537
           D   DG+  R   E++D  RG  GR DG     +   ++DV LV+H
Sbjct: 112 DSSRDGRRDRPFEEKLDGSRG--GRRDGPRDYEKYHGMRDVRLVSH 155


>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +3

Query: 516  GRGTGGSSDMDGIERQIPASSADRGRGQTGEE**AGSLEDPR-EPGHPARQSGFGSAHAG 692
            GRG  G     G+     A   D   G  GE   AG L+ P+ EPG P R    G    G
Sbjct: 1356 GRGFKGDQGPPGLNGNPGAPGVDGPTGPKGESGIAG-LDGPKGEPGLPGRDGPAG--EKG 1412

Query: 693  *PG 701
             PG
Sbjct: 1413 SPG 1415


>SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 1841

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 10/42 (23%)
 Frame = +2

Query: 494 PVESCQLRTWNWWLI----------RYGRYRAPDPSFLCRSR 589
           P  SC +R +NWWL           +Y R+ A +P+ LC  R
Sbjct: 539 PDLSCLMRQYNWWLAWHLALLCLMRQYNRWLAWNPALLCLMR 580


>SB_40170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 409 QQTDGQIHRQHHER---VDSRRGGFGREDGRPSR 501
           Q+ DG+ HR+H +     +S+R     +DGRP R
Sbjct: 156 QRGDGRPHREHRQEGREQESKRDSQNGDDGRPHR 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,039,794
Number of Sequences: 59808
Number of extensions: 430276
Number of successful extensions: 1265
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)