Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021734
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19152-1|CAA79536.1|  531|Caenorhabditis elegans Hypothetical pr...    85   4e-17
Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF077544-2|AAK39243.2|  644|Caenorhabditis elegans Hypothetical ...    30   1.9  
U39745-4|AAA80446.1|  325|Caenorhabditis elegans Collagen protei...    29   2.5  
Z71178-1|CAA94874.1|  297|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U58756-8|AAY44005.1|  183|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z46791-2|CAA86756.1|  283|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen pro...    29   4.4  
AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen pro...    29   4.4  
Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF043700-2|AAB97570.1|  283|Caenorhabditis elegans Collagen prot...    28   5.8  
U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z19152-1|CAA79536.1|  531|Caenorhabditis elegans Hypothetical
           protein B0464.1 protein.
          Length = 531

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 41/84 (48%), Positives = 60/84 (71%)
 Frame = +2

Query: 257 ENLSIKMDGQTVWVRARLQTSRAKGKQCFAVLRQTSSTVQLLVSVNEQRKISKQMVKFTG 436
           + +++    + VWVR R+ T+R+KGK CF VLRQ   TVQ+ + +NE  KISKQM+KF  
Sbjct: 73  KEINVSNATKDVWVRGRIHTTRSKGKNCFLVLRQGVYTVQVAMFMNE--KISKQMLKFVS 130

Query: 437 NITRESIVDVEASVVRTAAPVESC 508
           +I++ESIVDV A++ +   P+ESC
Sbjct: 131 SISKESIVDVYATINKVDNPIESC 154



 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 41/72 (56%), Positives = 52/72 (72%), Gaps = 5/72 (6%)
 Frame = +1

Query: 514 KDVELVAHQIWTVSSARSQLPLQIEDAAR-----PEKSDEPEALKIRVNQDTRLDNRVLD 678
           KDVEL+A Q++ VS++  +LPLQIEDA+R      EK+ E E     VN DTRLDNRV+D
Sbjct: 157 KDVELLAQQVFVVSTSAPKLPLQIEDASRRAPTDEEKASEQENQLAVVNLDTRLDNRVID 216

Query: 679 LRTPANQAVFRI 714
           LRTP + A+FRI
Sbjct: 217 LRTPTSHAIFRI 228


>Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 613 HSSPVWPRPRSAEEA-GIWRSIPSISDEP--PVPRP*LA 506
           H S   P P   +E  G W  +PS   EP  PVPRP LA
Sbjct: 468 HGSGSGPMPEQTDEVPGPWEPVPSPVPEPEDPVPRPELA 506


>Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 613 HSSPVWPRPRSAEEA-GIWRSIPSISDEP--PVPRP*LA 506
           H S   P P   +E  G W  +PS   EP  PVPRP LA
Sbjct: 468 HGSGSGPMPEQTDEVPGPWEPVPSPVPEPEDPVPRPELA 506


>Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.6 protein.
          Length = 316

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/45 (42%), Positives = 19/45 (42%)
 Frame = +3

Query: 567 PASSADRGRGQTGEE**AGSLEDPREPGHPARQSGFGSAHAG*PG 701
           P  S  RGRG  G     GS   P  PG P   SG     AG PG
Sbjct: 195 PGKSGQRGRGLPGPSGAPGSQGPPGAPGQPG--SGNAPGPAGPPG 237


>AF077544-2|AAK39243.2|  644|Caenorhabditis elegans Hypothetical
           protein H22K11.2 protein.
          Length = 644

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
 Frame = +2

Query: 527 WWLIR---YGRYRAPDPSFL 577
           WWLIR    G+YR+ DPSF+
Sbjct: 134 WWLIRNTKIGKYRSSDPSFM 153


>U39745-4|AAA80446.1|  325|Caenorhabditis elegans Collagen protein
           173 protein.
          Length = 325

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 519 RGTGGSSDMDGIERQIPASSADRGRGQTGEE**AGSLEDPREPGHPARQSGFGS 680
           RG  G +  DG +     S      G TG+E   G + +P +PG P +    G+
Sbjct: 253 RGPPGPAGPDGPQGPEGRSGKQGPPGPTGQEGEEGVIGEPGKPGEPGKSGAAGA 306


>Z71178-1|CAA94874.1|  297|Caenorhabditis elegans Hypothetical
           protein B0024.1 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = +3

Query: 522 GTGGSSDMDGIERQIPASSADRGR-GQTGEE**AGSLE---DPREPGHPARQSGFGSAHA 689
           G  G    DG   Q P    + GR GQ G +  AG      +P +PGHP +    G    
Sbjct: 162 GQVGRPGPDGRPGQ-PGRRGNDGRPGQPGPQGNAGQPGRDGNPGQPGHPGKDGRRGHGSP 220

Query: 690 G*PGR 704
           G PGR
Sbjct: 221 GAPGR 225


>U58756-8|AAY44005.1|  183|Caenorhabditis elegans Hypothetical
           protein F58F9.11 protein.
          Length = 183

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 278 DGQTVWVRARLQTSRAKGKQCFAVLRQTSSTVQLLVSVNEQRKISKQMVKFT 433
           DG T+W+R R   S + G  C     ++++T       + +  + K  + FT
Sbjct: 106 DGDTMWIRTRRCLSESAGCNCTGNNTESTTTCPCRAMTSIESGLEKLSISFT 157


>Z46791-2|CAA86756.1|  283|Caenorhabditis elegans Hypothetical
           protein C09G5.3 protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
 Frame = +3

Query: 483 GRPPQSNRAN*G----RGTGGSSDMDGIERQIPASSADRGRGQTGEE**AGSLEDPREPG 650
           GRP Q  R   G    +G  G+   DG   +      D   GQ G+E  AG    P EPG
Sbjct: 193 GRPGQPGRKAIGEAGPKGPPGAPGTDGRRGENGTDGDDGVDGQPGDEGDAGKDGTPGEPG 252

Query: 651 HPARQSGFG 677
               Q   G
Sbjct: 253 PQGEQGTEG 261


>AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen
           protein 143 protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 522 GTGGSSDMDGIERQIPASSADRGRGQTGEE**AGSLEDPREPGHP 656
           G  G+    G   Q  A +   GRG  G    AG    P +PGHP
Sbjct: 143 GPPGAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHP 187


>AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen
           protein 142 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 522 GTGGSSDMDGIERQIPASSADRGRGQTGEE**AGSLEDPREPGHP 656
           G  G+    G   Q  A +   GRG  G    AG    P +PGHP
Sbjct: 143 GPPGAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHP 187


>Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.5 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/45 (40%), Positives = 18/45 (40%)
 Frame = +3

Query: 567 PASSADRGRGQTGEE**AGSLEDPREPGHPARQSGFGSAHAG*PG 701
           P  S  RGRG  G     G    P  PG P   SG     AG PG
Sbjct: 195 PGKSGQRGRGLPGPSGAPGPQGPPGAPGQPG--SGNAPGPAGPPG 237


>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical protein
            F48E3.3 protein.
          Length = 1493

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 331  AFSSRSLQTGSNPNGLTIHFDTQIFKSV*TLSRCSPDDWII 209
            A S  S     N N   + FD    K + TLS  +PD WI+
Sbjct: 999  AASELSFDHNGNLNTNVVRFDNLPSKQLLTLSLQAPDSWIV 1039


>AF043700-2|AAB97570.1|  283|Caenorhabditis elegans Collagen protein
           49 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 685 CADPKPDCRAGCPGSRGS 632
           CA+P  +C AG PG +GS
Sbjct: 88  CAEPTKNCPAGPPGEKGS 105


>U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical
           protein B0261.1 protein.
          Length = 779

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = +1

Query: 400 TEDQQTDGQIHRQHHERVDSRRGGFGREDGRPSRI-VPIKD-VELVAHQIWTVSSA-RSQ 570
           TE+ +TDG+  ++    VDS  GG   +  R   + VP++D  E+      T SSA  S 
Sbjct: 686 TEESKTDGEDRKKRSADVDS--GGPSPKVARLEGVDVPVEDSTEVATSSTVTSSSAPSSS 743

Query: 571 LPLQIEDAARPEKSDEPEALKIR 639
               +  A +P  + +P     R
Sbjct: 744 SSTTVAPAIKPSTAPKPAIASAR 766


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,354,743
Number of Sequences: 27780
Number of extensions: 313613
Number of successful extensions: 1335
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)