Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021732
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.32 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.32 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.42 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.42 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.42 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   0.96 
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   6.8  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   9.0  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 591 WKWMLSLGWLVYGIGDLMI 535
           +KW+  L W  YG G LMI
Sbjct: 585 FKWLSFLSWFRYGNGALMI 603


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 591 WKWMLSLGWLVYGIGDLMI 535
           +KW+  L W  YG G LMI
Sbjct: 585 FKWLSFLSWFRYGNGALMI 603


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 292 RTSPPSSKATATRILSILKLSFFLPPLASK 381
           R+SP ++ A A+  ++I  +S  +PP AS+
Sbjct: 250 RSSPTTATAIASATVTIQNVSNTIPPFASR 279


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 292 RTSPPSSKATATRILSILKLSFFLPPLASK 381
           R+SP ++ A A+  ++I  +S  +PP AS+
Sbjct: 198 RSSPTTATAIASATVTIQNVSNTIPPFASR 227


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 292 RTSPPSSKATATRILSILKLSFFLPPLASK 381
           R+SP ++ A A+  ++I  +S  +PP AS+
Sbjct: 381 RSSPTTATAIASATVTIQNVSNTIPPFASR 410


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 16  SAASAIPSLVNAFSSSKPPQTDNPSAR 96
           +AA  +P + N  S   PP T+N  A+
Sbjct: 209 TAAFMLPIIHNLLSDKNPPNTENNCAQ 235


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 273 VTVQSLPNVSSIIKGYRDAYLVNLEAVV 356
           VT+  LPNV+S +     A   NLE VV
Sbjct: 215 VTLTVLPNVNSTVYYDPRALSPNLEFVV 242


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 534 RSSNPRFHTPTTPDLTSISINPLTPY*KEFAP 629
           RSS+P+   PT P +   ++    P  K   P
Sbjct: 90  RSSSPQTSAPTGPPIVRCALRKHKPNRKPRTP 121


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,128
Number of Sequences: 336
Number of extensions: 2830
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)