Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021732
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    33   0.028
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.45 
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    29   0.78 
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    28   1.0  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    28   1.4  
SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccha...    27   1.8  
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    27   2.4  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   3.2  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    26   4.2  
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi...    26   4.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   4.2  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   4.2  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   5.5  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   7.3  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   7.3  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   9.7  
SPBC17D1.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.7  
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    25   9.7  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 33.5 bits (73), Expect = 0.028
 Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 4/139 (2%)
 Frame = +3

Query: 189 PGTVSSTFDHPFSTPVLRSYWHETKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFP 362
           P T +ST     + P   S    T +N  T  S+P  S+ +              +V + 
Sbjct: 400 PPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYT 459

Query: 363 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPAISATSTRSS 542
           S P    P+T   C T+  +      V +TP +        ++ + +T    S  +  SS
Sbjct: 460 STPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSS 519

Query: 543 NPRFHTP--TTPDLTSISI 593
            P   TP  TT   TS S+
Sbjct: 520 TPVTSTPVTTTNCTTSTSV 538



 Score = 29.9 bits (64), Expect = 0.34
 Identities = 20/76 (26%), Positives = 34/76 (44%)
 Frame = +3

Query: 372 SLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPAISATSTRSSNPR 551
           S  +P T   C T+  +   G + L+TP +  +     +      +P  S +ST +++  
Sbjct: 219 SSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTS-STSIPIPPTSTSSTDTNSSP 277

Query: 552 FHTPTTPDLTSISINP 599
             T +T   TS SI P
Sbjct: 278 LPTTSTSCTTSTSIPP 293



 Score = 29.9 bits (64), Expect = 0.34
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
 Frame = +3

Query: 318 YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMH 497
           Y    + +    +  S P    PVT   C T+  V      V +TP +        ++ +
Sbjct: 504 YTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPY 563

Query: 498 QATLPAISATSTRSSNPRFHTP--TTPDLTSISI 593
            +T    S  +  SS P   TP  TT   TS S+
Sbjct: 564 TSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSV 597


>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 257

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = +3

Query: 249 WHETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLC-W---TTA 416
           WH+ + + V    L   S+ I  ++ A +   +   FPS P   IP   ++C W   T  
Sbjct: 56  WHKPRPDDVLATDLLVFSTDIASHKAAEIAEQQKNTFPSGP---IPNAFEMCGWLPKTMQ 112

Query: 417 DVTVEGVNVLATPSSA 464
            + + G   L TP  A
Sbjct: 113 QIRISGQIWLYTPELA 128


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
 Frame = +3

Query: 282 QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATP 455
           QSL N+S  S I   R     N  A  FPS  S  +P  VDL     DV+ E    L+TP
Sbjct: 321 QSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQMDVSDEEQRFLSTP 379

Query: 456 -SSARITIGGLALMHQATLPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 611
             S   +I G + +++ +      TS+  S P   T T+  + S++ +    Y
Sbjct: 380 LGSFDESILGSSPINRLSSSFKQYTSSLKS-PGLSTRTSSTMNSLNSSRFGAY 431


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 479 RSRPYASSYPPCDLGYINPIIKSPIPYTNHPRLNIHFHQSADAVL 613
           +S PY   Y  C L    PI+ + IPY +   LN +  Q+    L
Sbjct: 57  KSLPY--KYDNCKLSICVPIVTTCIPYHSVENLNFNIRQNISTTL 99


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 493 IRARPPIVMRADEGVASTLTPSTVTSAVVQQRSTVTGILR 374
           I A P   +R+    AS+ TP+  T+A+ QQ     GI+R
Sbjct: 9   IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47


>SPAC29B12.04 |snz1||pyridoxine biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -1

Query: 601 SGLMEMDVKSGVV-GVWNRGFDDRVDVAEIAGRVA*CIRARPPIVMRADEGVASTLTPST 425
           +GL +M +K GV+  V N    ++  +AE AG  A     R P  +RA  GVA    PS 
Sbjct: 13  AGLAQM-LKGGVIMDVVNA---EQARIAEAAGACAVMALERVPADIRAQGGVARMSDPSM 68

Query: 424 VTSAVVQQRSTVTGILRLG 368
           +          V   +R+G
Sbjct: 69  IKEIQAAVSIPVMAKVRIG 87


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +3

Query: 408 TTADVTVEGVNVLATPSSARITIGGLALMHQATLPAISATSTRSSNPRFH 557
           + +DV V+  N L       +    + ++  A L  I+A    + NP FH
Sbjct: 177 SVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFH 226


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +3

Query: 309 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 398
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 222 FSTPVLRSYWHETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPS 374
           F + +  ++WH+  +  V  Q L      I G  + Y     ++VF  APS
Sbjct: 12  FHSSIDATFWHQLSNYKVEKQKLDASPLTIHGKFNTYSRGNISIVFGEAPS 62


>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
           Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 488 PYASSYPPCDLGYINPIIKSP 550
           PYA+ +P   L Y NP   SP
Sbjct: 96  PYAAEHPFSRLAYFNPAFNSP 116


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 516 ISATSTRSSNPRFHTPTTPDLTSIS 590
           IS +ST   N  FH PT    TS S
Sbjct: 804 ISTSSTNEYNTSFHAPTVSSTTSSS 828


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 304 PSSKATATRILSILKLSFFLPPL 372
           PSSKAT   I S  +L++ +PPL
Sbjct: 66  PSSKATRPYIPSYTRLTYSVPPL 88


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 419 RHS*RSQCAGHPFIRSHYYWRSRPYASSYPPCDLGYINPIIKSPIPYTN 565
           R S  + C   P   SH+ W   PY ++  P    Y N  I S I Y++
Sbjct: 399 RDSSDTSCTESPPEPSHFAWAFDPYNATASP----YYNQNINSSIDYSS 443


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 1   VPLVVSAASAIPSLVNAFSSSKPPQTD 81
           +P++ ++A  IPSL  A   SK P T+
Sbjct: 246 IPMIFTSALLIPSLYPALERSKLPFTE 272


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 259 PNRTVSLCNHYRTSPPSSKATATRILSILKLSFFLPP 369
           P++ +S   +Y TSPPSS ++ +    ++  S  L P
Sbjct: 83  PDKAIS--QYYETSPPSSTSSLSSNNQLMNSSVILSP 117


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = +3

Query: 399 LCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPAISATSTRSSNPRFHT------ 560
           LC  TA++ +EG + L     AR  I    L     +P ++    ++SN   H+      
Sbjct: 166 LCDITAEL-LEGFSSLEFSIHARSVI----LSPITDMPHLAPLQRKNSNASIHSLGSSSR 220

Query: 561 PT---TPDLTSISINPLTPY*KEFAPG 632
           PT   TP +TS S+N +T   K  + G
Sbjct: 221 PTLTRTPSITSRSVNSVTERSKSLSKG 247


>SPBC17D1.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 253 TKPNRTVSLCNHY-RTSPPSSKATATRILSILKLSFFLPPLASKYQSQLTFVGLLLTSQ 426
           T+ N   S  + Y R  PP  +A    I SI   SFF    AS+++ +  ++ + L S+
Sbjct: 70  TRRNELQSDLDGYERRIPPRLRAVWPTIHSIPDESFFDGTSASRFRQEAAYLAVRLASK 128


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 247 TGTKPNRTVSLCNHYRTSPPSSKATATRILSILKLS 354
           +G  PN TVS   +    PPS +    +IL+   L+
Sbjct: 135 SGISPNATVSNAQYGPAQPPSVEEQVQKILNAWNLN 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,895
Number of Sequences: 5004
Number of extensions: 47751
Number of successful extensions: 224
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)