Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021732
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898... 33 0.27
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.61
03_04_0192 + 18302114-18302362,18302664-18302732,18302752-183028... 31 1.1
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 2.5
12_02_0985 + 25052753-25053691 29 4.3
01_05_0227 - 19512866-19514983 29 4.3
08_01_0311 - 2753062-2753232,2753340-2753381,2754490-2754667,275... 28 5.7
02_05_0345 - 28142434-28142658,28143087-28143158,28143252-281433... 28 5.7
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 7.6
>06_01_1096 -
8988463-8989167,8989335-8989361,8989560-8989648,
8989830-8990039,8990877-8991047,8991595-8991777,
8991886-8991969,8992067-8992178
Length = 526
Score = 32.7 bits (71), Expect = 0.27
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +3
Query: 483 LALMHQATLPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLV 650
LAL+ + L +S P TP SI+ P PY K P L+PPL+
Sbjct: 268 LALLQRQVLGMVSTADVHCFKDTEKEPQTPPRPSIASIP--PYQKPLKPSLRPPLI 321
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 513 AISATSTRSSNPRFHTPTTP 572
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>03_04_0192 +
18302114-18302362,18302664-18302732,18302752-18302823,
18303545-18303710,18303967-18304604
Length = 397
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 450 TPSSARITIGGLALMHQATLPAISATSTRSSNPRFHTPT-TPDLTSISINP 599
TP+S++ T G A+ A +PA + + ++N TPT P + + NP
Sbjct: 29 TPASSKATAGAAAVGRAARIPASRSRGSATTNKAMATPTVAPSSRAKASNP 79
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 378 KIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPAISATSTRS 539
K+ V +D TAD+++ +N+L P G L+HQ + A T +
Sbjct: 209 KVAVMMDDMIDTADISLPNINILMKPIKLGTIAKGAELLHQEGAREVYACCTHA 262
>12_02_0985 + 25052753-25053691
Length = 312
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -1
Query: 493 IRARPPIVMRADEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTASRLTRYASR*P 314
+ +R + +R D S+ + +T S + S + GAEG TTAS LT S P
Sbjct: 127 VSSRTGLFLRGDCHRNSSASNATNCSIPAETMSRMVPTASCGAEGNTTASALTCVTSTSP 186
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 430 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 338
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>08_01_0311 -
2753062-2753232,2753340-2753381,2754490-2754667,
2755021-2755118,2755964-2756098,2756280-2756444,
2756529-2756693,2757082-2757299,2758508-2758811
Length = 491
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -1
Query: 583 DVKSGVVGVWNRGFDDRVDVAEIAGRVA*CIRARPPIVMR 464
+V+ G+VGV G + ++A +AG V RA PP+ +R
Sbjct: 13 EVRYGIVGVGMMGREHLHNLAHLAGEVG---RAEPPVRLR 49
>02_05_0345 -
28142434-28142658,28143087-28143158,28143252-28143371,
28143483-28143674,28144919-28145017,28145448-28145594,
28146310-28146513
Length = 352
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 521 RDRREGSLMHKGETANSNASG*RGGQHIDSFNCD 420
R R S+ G +AN SG R G H SF+CD
Sbjct: 9 RLRVYSSVSGDGRSANGAGSGKRVGTHNGSFHCD 42
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +3
Query: 267 NSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVL 446
N TV + N + GY+ +N+ + PSLK D C T ++ +EG++ L
Sbjct: 219 NEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK-----DFCEPTVEM-LEGMSAL 272
Query: 447 ATPSSARITI 476
S+ + +
Sbjct: 273 KALSTVMLLL 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,127,198
Number of Sequences: 37544
Number of extensions: 340362
Number of successful extensions: 1215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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