Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021732
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)           32   0.48 
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_24975| Best HMM Match : ET (HMM E-Value=1)                          31   1.1  
SB_30122| Best HMM Match : YadA (HMM E-Value=2)                        30   1.5  
SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)                 29   3.4  
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_24761| Best HMM Match : LRR_1 (HMM E-Value=0.0056)                  29   3.4  
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)               29   4.4  
SB_34354| Best HMM Match : Motile_Sperm (HMM E-Value=0.6)              29   4.4  
SB_34976| Best HMM Match : N_methyl (HMM E-Value=1.7)                  29   4.4  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_17639| Best HMM Match : Paf1 (HMM E-Value=0)                        28   7.7  
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    28   7.7  
SB_34777| Best HMM Match : VWA (HMM E-Value=0)                         28   7.7  

>SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)
          Length = 279

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 23/116 (19%), Positives = 48/116 (41%)
 Frame = +3

Query: 297 VSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITI 476
           +SS+   +   +L N++ ++ P    +    +V +  TT+ +         TP+ ++   
Sbjct: 9   ISSLSSSFVINFLNNIDTLILPFVFHIVATTSVVMV-TTSVIPASASGSTITPTPSKTNS 67

Query: 477 GGLALMHQATLPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPP 644
             +  M +     +  + TRSS+     P  P L+S + +   P     +  L PP
Sbjct: 68  FDVLTMTKVVFRTMRVSQTRSSSSSQSLPPPPSLSSQTSSSSPPPSSSSSQSLPPP 123


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
 Frame = +3

Query: 360 PSAPSL-KIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPAISATSTR 536
           PS PS    P+T     T    +  G     +  S   T    +L H  + P+  +T + 
Sbjct: 407 PSTPSTPSTPITPRTPSTPCTHSTPGTPSTPSTPSTPSTPSTPSLTHTPSTPSTPSTPST 466

Query: 537 SSNPRFHTPTTPDLTSISINPLTP 608
            S P   TP+TP   S    P TP
Sbjct: 467 PSTPS--TPSTPSTPSTPSTPSTP 488



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 447 ATPSSARITIGGLALMHQATLPAISATSTRSSNPRF-HTPTTPDLTSISINPLTP 608
           +TPS+   T    +L H  + P+  +T +  S P   +TP+TP   S    P+TP
Sbjct: 662 STPSTPS-TPSTPSLTHTPSTPSTPSTPSTPSTPSMPNTPSTPSTPSTPSTPITP 715


>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 495 HQATLPA-ISATSTRSSNPRFHTPTTPDLTSISINPLTP 608
           HQ+  P  ++  S +S+NPR HTP  P   S +  PLTP
Sbjct: 72  HQSNTPRPLTPPSRQSNNPRPHTP--PSCQSNTPRPLTP 108


>SB_24975| Best HMM Match : ET (HMM E-Value=1)
          Length = 316

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 37/132 (28%), Positives = 50/132 (37%), Gaps = 7/132 (5%)
 Frame = +3

Query: 195 TVSSTFDHPFSTPVLRSYWHETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPS 374
           T   T+  P S+  LRS+ H       TV   P  S I   +R     N      P +PS
Sbjct: 48  TTMCTYKTPLSSSALRSHQH------ATVNQHPPSSWIPLKHRVPVTTNT-----PLSPS 96

Query: 375 LKIPVTVDLCWTT-----ADVTVEGVNVLATPSS--ARITIGGLALMHQATLPAISATST 533
             +  +V +   T     A VT        TP S  A +T       +    P+ S T++
Sbjct: 97  ASVTASVSVTPNTPLSPSASVTASVSVTPNTPLSLSASVTASVSVTPNTPQSPSASVTAS 156

Query: 534 RSSNPRFHTPTT 569
            S  P  HTP T
Sbjct: 157 VSVTPNIHTPVT 168


>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
          Length = 408

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 363 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARIT 473
           S P  K+P+T     T+A+VT    +++ +PS A +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275


>SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)
          Length = 1472

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 369 PSLKIPVTVDLCWTTADVTVEGVNVLATPSSARIT 473
           P  K+P+T     T+A+VT    +++ +PS A +T
Sbjct: 816 PETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 850


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 447 ATPSSARITIGGLALMHQATLPAISATSTRSSNPRFHTPTTPDLTSISINPLT 605
           A+P+  R ++G LA   + + P   +T    S  R  TP+TP   S    P T
Sbjct: 183 ASPA-LRSSLGSLAPTSRTSTPTSRSTPRSRSRSRARTPSTPSTPSTPSTPST 234


>SB_24761| Best HMM Match : LRR_1 (HMM E-Value=0.0056)
          Length = 298

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 464 SHYYWRSRPYASSYPPCDLGYINPIIKSPIPYT 562
           SH   RSR  ASSY P D+G ++ ++   +P+T
Sbjct: 122 SHGAVRSRLRASSYWPRDVGNLSHLLLKAVPWT 154


>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
          Length = 1249

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
 Frame = +3

Query: 354  VFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGG---LALMHQATLPAISA 524
            V P++     P   D+   + D   +  + + T S  ++T      L        P+ S 
Sbjct: 889  VTPTSDDQVTPSASDVPTASDDQVTQSASNVPTASDNQVTPSASDVLTAKDDHVTPSASD 948

Query: 525  TSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAP 629
              T S +    T +  D+TS S N +TP+  +F P
Sbjct: 949  VPTTSDDQV--TQSASDVTSTSDNQITPFASDFTP 981


>SB_34354| Best HMM Match : Motile_Sperm (HMM E-Value=0.6)
          Length = 716

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 24/72 (33%), Positives = 32/72 (44%)
 Frame = +3

Query: 423 TVEGVNVLATPSSARITIGGLALMHQATLPAISATSTRSSNPRFHTPTTPDLTSISINPL 602
           TV GV ++  P           ++HQ TL  +   S  S N RFH P T +    + NP 
Sbjct: 4   TVAGVRIV--PPVVEFFDAETDVVHQMTL-TVQNLSKCSRNIRFHGPATNNFKLKAKNPD 60

Query: 603 TPY*KEFAPGLK 638
            P     APGL+
Sbjct: 61  RP----IAPGLE 68


>SB_34976| Best HMM Match : N_methyl (HMM E-Value=1.7)
          Length = 177

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = -1

Query: 472 VMRADEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTASRLTRYASR*PLMMEETF 293
           V R      +TLT  T+ ++ +   S+ T    +    KTT S +T  ++  P+++  + 
Sbjct: 81  VPRCISPTTATLTTETIAASQLTPSSSATTTTTIRTNTKTTESTITSLSTSLPVILPTSS 140

Query: 292 GSDCTVTLFDLV 257
            S   ++L  LV
Sbjct: 141 KSSSALSLEVLV 152


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 558 TPTTPDLTSISINPLTPY 611
           TPT PD+T +SI  L PY
Sbjct: 75  TPTRPDVTQLSITGLKPY 92


>SB_17639| Best HMM Match : Paf1 (HMM E-Value=0)
          Length = 335

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 507 LPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 608
           L AI  T   +  P  H P+ P+LT + + P+ P
Sbjct: 117 LAAIENTFEAAKKPIHHHPSKPNLTPVEVLPVFP 150


>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 383 TSHS*PLLDYC*RHS*RSQCAGHPFIRSHYYWRSRPY 493
           T +   LL YC     R   AGHPF+   Y +  R Y
Sbjct: 91  TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVY 127


>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1268

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +3

Query: 279  VQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 389
            ++ + NV+ +    RDA+ V   AVV+ S PSL+IP+
Sbjct: 1101 IEFVKNVTKMFPLSRDAFSVG--AVVYGSEPSLEIPL 1135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,001,154
Number of Sequences: 59808
Number of extensions: 368418
Number of successful extensions: 1442
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)