Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021732
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-12|AAA93490.1|  134|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z68012-5|CAA92019.1|  408|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    29   2.9  
AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical...    29   3.9  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    29   3.9  
Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n...    27   8.9  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    27   8.9  

>U53181-12|AAA93490.1|  134|Caenorhabditis elegans Hypothetical
           protein F36D4.6 protein.
          Length = 134

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +3

Query: 195 TVSSTFD---HPFSTPVLRSYWHETKSNSVTVQSLPNVSS 305
           T SS F    HPFS+P LR +   T   +V + S P V+S
Sbjct: 3   TYSSPFSRLLHPFSSPPLRPHQDSTTRQTVFIYSSPPVNS 42


>Z68012-5|CAA92019.1|  408|Caenorhabditis elegans Hypothetical
           protein T24D5.5 protein.
          Length = 408

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -1

Query: 607 GVSGLMEMDVKSGVVGVWNRGFDDRVDVAEIAG---RVA*CIRARPPIVMRAD 458
           G S L  M+ +S ++  W R  DDRV+    A        C+ + PP V+  D
Sbjct: 323 GSSSLSNMNAQSSLMVCWKRSTDDRVNAQRFATSHLEHNSCLESLPPHVLYPD 375


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 447 ATPSSARITIGGLALMHQATLPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 611
           AT +S+ IT G  +    +T  A+S+T+T  S     TP     T  S   ++PY
Sbjct: 817 ATSTSSVITTGSTSAPQSST--AVSSTTTSPSTTTGSTPAPQSSTVASTTTVSPY 869


>AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12b protein.
          Length = 504

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
 Frame = -1

Query: 469 MRADEGVASTLTPSTVTSAV----VQQRSTVTGILRLGAEGKTTASRLTRYASR*PLMME 302
           +R+D+G A T  PST  +AV    V Q ST   + +L A G   +S +   A    L+  
Sbjct: 33  VRSDDGEAETSEPSTSVTAVPMEIVSQASTSAPVNQLLASGIDMSSVIKNNAVLQALLAS 92

Query: 301 ET---FGSDCTVTLFDLVSCQ-*DRSTGVEKG*SNVEET-VPGKIR 179
            +   FG +  +T+  L++    + ST V K  +    T +P K R
Sbjct: 93  ASAGGFGDNAGLTMSKLLTAALANGSTAVAKRDAGSPRTDIPKKTR 138


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
 Frame = -1

Query: 469 MRADEGVASTLTPSTVTSAV----VQQRSTVTGILRLGAEGKTTASRLTRYASR*PLMME 302
           +R+D+G A T  PST  +AV    V Q ST   + +L A G   +S +   A    L+  
Sbjct: 33  VRSDDGEAETSEPSTSVTAVPMEIVSQASTSAPVNQLLASGIDMSSVIKNNAVLQALLAS 92

Query: 301 ET---FGSDCTVTLFDLVSCQ-*DRSTGVEKG*SNVEET-VPGKIR 179
            +   FG +  +T+  L++    + ST V K  +    T +P K R
Sbjct: 93  ASAGGFGDNAGLTMSKLLTAALANGSTAVAKRDAGSPRTDIPKKTR 138


>Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical
           protein F15D4.4 protein.
          Length = 608

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 498 QATLPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 611
           Q T+P  + TST+++     TPTT  +T+  +   TPY
Sbjct: 86  QTTIPTTTPTSTQTT-----TPTTTTITTTPVPTTTPY 118


>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 20
           protein.
          Length = 1254

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +1

Query: 19  AASAIPSLVNAFSSSKPPQTD----NPSARSMDMQ 111
           +AS  P LVN  S+ +PPQ       PSA+ + MQ
Sbjct: 476 SASNSPLLVNLLSNQQPPQQQYMYPGPSAQGLSMQ 510


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
           protein 10 protein.
          Length = 2302

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 411 TADVTVEGVNVLATPSSARITIGGLALMHQATLPAISATSTRS 539
           T +++V+ + +  T    R+T+     + + T+P  S++ST S
Sbjct: 194 TTNISVDVIKLAPTTKRTRVTVPDRPKLMETTVPVTSSSSTSS 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,822,733
Number of Sequences: 27780
Number of extensions: 267288
Number of successful extensions: 1026
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)