Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021732
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR ...    31   0.90 
At3g46850.1 68416.m05085 subtilase family protein contains simil...    29   2.7  
At5g57710.1 68418.m07214 heat shock protein-related contains sim...    29   3.6  
At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam...    29   3.6  
At3g08550.1 68416.m00992 elongation defective 1 protein / ELD1 p...    28   4.8  
At5g55020.1 68418.m06853 myb family transcription factor (MYB120...    28   6.3  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    28   6.3  
At4g01530.1 68417.m00198 hypothetical protein                          27   8.4  
At3g22410.1 68416.m02827 expressed protein                             27   8.4  

>At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 787

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = +3

Query: 180 RIFPGTVSSTFDHPFSTPVLRSYWHETKSNSVTVQSLPNVSSIIKGYRDAY-LVNLEAVV 356
           +IFP     T DH      L+S +  T  NS+++ + P +  + K   +   L  L    
Sbjct: 625 KIFPSLSDLTIDHCDDLLELKSIFGITSLNSLSITNCPRILELPKNLSNVQSLERLRLYA 684

Query: 357 FPSAPSLKIPVTVDLCWTTADVTVEGVNVLATP 455
            P   SL + V    C    D++ + V++++ P
Sbjct: 685 CPELISLPVEVCELPCLKYVDIS-QCVSLVSLP 716


>At3g46850.1 68416.m05085 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo];
          Length = 736

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
 Frame = +3

Query: 255 ETKSNSVTVQSLPNVSSIIKG-YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 431
           +T+ N    Q++  V+SI++  Y DA      A VF        PV+V L     ++ + 
Sbjct: 401 DTQRNPGEAQAMGAVASIVRNPYEDA------ASVF------SFPVSV-LSEDDYNIVLS 447

Query: 432 GVNVLATPSSARITIGGLALMHQATLPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 611
            VN    P +A   +    + +Q   P +++ S+R  NP  H    PD+T+     L  Y
Sbjct: 448 YVNSTKNPKAA--VLKSETIFNQKA-PVVASYSSRGPNPLIHDILKPDITAPGSEILAAY 504


>At5g57710.1 68418.m07214 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 990

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +3

Query: 222 FSTPVLRSYWHETKSNSVTVQSLPNVSSIIKGYR 323
           FS+P +++   ++ +NSVT   +P+VSS+   +R
Sbjct: 152 FSSPAVKATIEQSLNNSVTPTPIPSVSSVGLNFR 185


>At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 794

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 507 LPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLVIR 656
           L  + A   +  NP  H P  PDL S++  P +P+     P   P  VIR
Sbjct: 193 LNVLIALRVKVENPHVHLP--PDLNSVASAPSSPHSTMRTPAPSPMDVIR 240


>At3g08550.1 68416.m00992 elongation defective 1 protein / ELD1
           protein annotation temporarily based on supporting cDNA
           gi|23452833|gb|AF543710.1|
          Length = 533

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +3

Query: 183 IFPGTVSSTFDHPFSTPVLRSYWHETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFP 362
           +F   VSS   +      L S      S S   +SLP+  S  +G    +L+  E+ + P
Sbjct: 459 VFSSVVSSASTNLSKKKFLSSIHKSNSSRSTASESLPSKESKSEGISARHLLEAESAIPP 518

Query: 363 SAP 371
            +P
Sbjct: 519 LSP 521


>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 523

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 510 PAISATSTRSSNPRF-HTPTTPDLTSISINPLTPY*KEFAPGLKPPLV 650
           P+ S+  T +S+P F H+  TP  TS   NP+    +E  P  + P +
Sbjct: 353 PSSSSYPTSTSSPSFLHSHYTPSSTSFHTNPVYSMKQEQLPSNQIPQI 400


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 282 QSLPNVSSIIKGYRDAY 332
           QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870


>At4g01530.1 68417.m00198 hypothetical protein 
          Length = 239

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +3

Query: 240 RSYWHETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTAD 419
           R  WH TKS   TV++ P +   +      +L     +   S   ++  +T  +C   AD
Sbjct: 49  RLIWHHTKSERYTVKTPPKIKHFLWQIASGFLAVTSKL---SHRGIQCDITCKMC-EMAD 104

Query: 420 VTVEGV 437
            T+  V
Sbjct: 105 ETINNV 110


>At3g22410.1 68416.m02827 expressed protein
          Length = 400

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 189 PGTVSSTFDHPFSTPVLRSYWHETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSA 368
           P  +S T   P++  V  S       + ++ +SLP  S  ++G++DA        +FPS 
Sbjct: 254 PWYLSFTDTSPYNPAVSSSA--AAPVSPLSARSLPFASPAVRGFKDAKPAACRKSLFPST 311

Query: 369 P 371
           P
Sbjct: 312 P 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,403,946
Number of Sequences: 28952
Number of extensions: 263705
Number of successful extensions: 952
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)