Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021731
         (715 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   4.3  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   5.7  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   5.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.5  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   7.5  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 664 ELLEKIVPDNSVFSDH 711
           ++ EK+ PD  VF+D+
Sbjct: 62  QITEKLCPDGMVFNDY 77


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 565 QVVQTALSETQDPEDISVTVKAFMTADLPNELIELLEKIVPDN 693
           + VQ     T+D +   V   + + AD+P E I   EK V  N
Sbjct: 154 EAVQEERQRTKDRDTSEVESTSNLQADMPLERIIEAEKRVECN 196


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 10  WFCTYIETVFRNILRFMYKRLILLV 84
           + C +    F+N + F Y+ L+ L+
Sbjct: 146 FLCRHTVEYFQNYIHFFYQLLLYLI 170


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 173 RKLSPNNQDQVLNDVFSTINI*QATN 96
           +   PNN D  + D   TIN  Q TN
Sbjct: 744 KDFKPNNPDIKVEDGTLTINNIQKTN 769


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 641 PTYPTNSLSCL 673
           PTY  NS+SC+
Sbjct: 25  PTYSMNSMSCV 35


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,409
Number of Sequences: 336
Number of extensions: 3459
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)