Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021731
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...   122   7e-29
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   2.7  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    27   2.7  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    27   3.5  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   4.7  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.7  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   4.7  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    26   6.1  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   6.1  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    25   8.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   8.1  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score =  122 bits (293), Expect = 7e-29
 Identities = 53/84 (63%), Positives = 69/84 (82%)
 Frame = +2

Query: 254  GSNEPATHNALAKIYIDSNNNPERFLRENQWYDSRVVGRYCEKRDPHLACVAYERGQCDR 433
            GS + A ++ALAKIYIDSNNNPE FL+EN +YD+  VG+YCEKRDP+LA +AYE+G  D 
Sbjct: 866  GSQDRAIYDALAKIYIDSNNNPEVFLKENNFYDTLTVGKYCEKRDPYLAFIAYEKGGNDT 925

Query: 434  ELIAVCNDNSLFKTQARYLVRRKD 505
            E+I +CN+NS+FK  ARYL++R D
Sbjct: 926  EIINLCNENSMFKQLARYLLKRSD 949



 Score = 95.1 bits (226), Expect = 9e-21
 Identities = 42/89 (47%), Positives = 64/89 (71%)
 Frame = +3

Query: 3    DDLVLYLYRNSLQKYIEIYVQKVNPSRLPXXXXXXXXXXCAEDIIKNLILVVRGQFSTDE 182
            +DLV YL+RN++ ++IEIYVQ++NPS+ P          C E++++NL++ V GQ   DE
Sbjct: 782  NDLVFYLFRNNMFQFIEIYVQRINPSKTPQVVGALLDIDCDEELVQNLLMSVVGQVPVDE 841

Query: 183  LVAEVEKRNRLKLLLPWLETRVHEAATNQ 269
            LV EVE+RNRLKLLLP+LE+ +   + ++
Sbjct: 842  LVEEVERRNRLKLLLPYLESLLQSGSQDR 870



 Score = 79.4 bits (187), Expect = 5e-16
 Identities = 38/69 (55%), Positives = 53/69 (76%)
 Frame = +1

Query: 505  SDLWLEVLSEENPYKRQLIDQVVQTALSETQDPEDISVTVKAFMTADLPNELIELLEKIV 684
            S+LW EVL +++ Y+R L+DQV+ TA+ E+ DPE +S+ VKA M  DLP++LIELLEKIV
Sbjct: 950  SNLWSEVL-QDSAYRRPLLDQVIATAVPESSDPEAVSIVVKALMEVDLPSQLIELLEKIV 1008

Query: 685  PDNSVFSDH 711
               S FS++
Sbjct: 1009 LQPSSFSEN 1017


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -3

Query: 314 CCWNRCRSWLE--HYVWLVRCCLMYSCFQ--PRKEEFQSIPLFH 195
           C W   +  LE   +++L+RCC MY             SIP F+
Sbjct: 5   CNWLELKGLLETNDFLYLMRCCYMYDTVSLVSNAPNIYSIPFFY 48


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +1

Query: 634 MTADLPNELIELLEK 678
           +TAD P+ELIELL+K
Sbjct: 74  VTADFPSELIELLQK 88


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 452 NDNSLFKTQARYLVRRKDQTSGSR 523
           +DN L KT ARYL+  K   S  R
Sbjct: 496 SDNELAKTHARYLIGGKSSVSKER 519


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 511 LWLEVLSEENPYKRQLIDQVVQTALSETQDPEDISVTVKAFMTA 642
           LWL    + NPY   +   V       TQDP+ ++ T ++  +A
Sbjct: 372 LWLTDYDQSNPYYTVIKTMVAFRKFVITQDPDWVTSTYQSIESA 415


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 192 EVEKRNRLKLLLPWLETRVHEAATNQPHIM 281
           EV     LK   PWL  R+HE  ++  H +
Sbjct: 9   EVNNNPELKSNFPWLADRIHEGRSSIFHAL 38


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
 Frame = +1

Query: 499 EGSDLWLEVLSEENPYKR--QLIDQVVQTALSETQDP-EDISVTVKAF 633
           E SDLW++ L +E   K   +L+D+  QTALS  ++  ++IS  V ++
Sbjct: 471 EKSDLWIKSLRQEYESKNLLELLDK-HQTALSSVENRLDEISEIVDSY 517


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
 Frame = +2

Query: 266 PATHNALAKIYIDSN------NNPERFLRENQWYDSR 358
           P +   L+ + ++SN      ++   FLR +QWYD+R
Sbjct: 201 PRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTR 237


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 607 DISVTVKAFMTADLPNELIELLEKIVPDNSVFSDHR 714
           DI      F+ A    +LI LLE+++      SDHR
Sbjct: 421 DIPSVCLEFLKAQEIKQLIRLLEELIKTGLATSDHR 456


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 4   TTWFCTYIETVFRNILRFMYKR 69
           TTW  TY + +++  LRF  K+
Sbjct: 127 TTWLWTYAKPIYQKWLRFSTKK 148


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 598 LEFQKELFAPPGQ*VASCKDSPQRAPRARGLILPAHQ-VASLGLKERV 458
           L+ Q+ELF      + SC   P   PR R +    H+ V+SL L E +
Sbjct: 375 LKLQQELFISY---LISCLHIPSTTPRERNVETSLHKVVSSLDLSEEI 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,597
Number of Sequences: 5004
Number of extensions: 53732
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)