Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021731
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 127 1e-29
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 127 1e-29
07_03_1251 + 25186333-25188027,25188113-25188208,25188292-251883... 28 6.4
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817... 28 6.4
02_03_0106 + 15292869-15296138 28 8.5
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 127 bits (306), Expect = 1e-29
Identities = 60/84 (71%), Positives = 64/84 (76%)
Frame = +2
Query: 254 GSNEPATHNALAKIYIDSNNNPERFLRENQWYDSRVVGRYCEKRDPHLACVAYERGQCDR 433
GS + HNAL KI IDSNNNPE FL N +YDSRVVG+YCEKRDP LA VAY RGQCD
Sbjct: 883 GSQDVHVHNALGKIIIDSNNNPEHFLTTNPFYDSRVVGKYCEKRDPTLAVVAYRRGQCDD 942
Query: 434 ELIAVCNDNSLFKTQARYLVRRKD 505
ELI V N NSLFK QARY+V R D
Sbjct: 943 ELINVTNKNSLFKLQARYVVERMD 966
Score = 97.1 bits (231), Expect = 1e-20
Identities = 47/66 (71%), Positives = 53/66 (80%)
Frame = +1
Query: 508 DLWLEVLSEENPYKRQLIDQVVQTALSETQDPEDISVTVKAFMTADLPNELIELLEKIVP 687
DLW +VL EN Y+RQLIDQVV TAL E++ PE +S VKAFMTADLP+ELIELLEKIV
Sbjct: 968 DLWDKVLQPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVL 1027
Query: 688 DNSVFS 705
NS FS
Sbjct: 1028 QNSAFS 1033
Score = 79.4 bits (187), Expect = 3e-15
Identities = 42/85 (49%), Positives = 49/85 (57%)
Frame = +3
Query: 6 DLVLYLYRNSLQKYIEIYVQKVNPSRLPXXXXXXXXXXCAEDIIKNLILVVRGQFSTDEL 185
DL YLY N++ +YIE YVQKVNP P C ED IK LIL VR + L
Sbjct: 800 DLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPL 859
Query: 186 VAEVEKRNRLKLLLPWLETRVHEAA 260
V E EKRNRL+LL +LE V E +
Sbjct: 860 VDECEKRNRLRLLTQFLEHLVSEGS 884
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 127 bits (306), Expect = 1e-29
Identities = 60/84 (71%), Positives = 64/84 (76%)
Frame = +2
Query: 254 GSNEPATHNALAKIYIDSNNNPERFLRENQWYDSRVVGRYCEKRDPHLACVAYERGQCDR 433
GS + HNAL KI IDSNNNPE FL N +YDSRVVG+YCEKRDP LA VAY RGQCD
Sbjct: 883 GSQDVHVHNALGKIIIDSNNNPEHFLTTNPFYDSRVVGKYCEKRDPTLAVVAYRRGQCDD 942
Query: 434 ELIAVCNDNSLFKTQARYLVRRKD 505
ELI V N NSLFK QARY+V R D
Sbjct: 943 ELINVTNKNSLFKLQARYVVERMD 966
Score = 97.1 bits (231), Expect = 1e-20
Identities = 47/66 (71%), Positives = 53/66 (80%)
Frame = +1
Query: 508 DLWLEVLSEENPYKRQLIDQVVQTALSETQDPEDISVTVKAFMTADLPNELIELLEKIVP 687
DLW +VL EN Y+RQLIDQVV TAL E++ PE +S VKAFMTADLP+ELIELLEKIV
Sbjct: 968 DLWDKVLQPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVL 1027
Query: 688 DNSVFS 705
NS FS
Sbjct: 1028 QNSAFS 1033
Score = 79.4 bits (187), Expect = 3e-15
Identities = 42/85 (49%), Positives = 49/85 (57%)
Frame = +3
Query: 6 DLVLYLYRNSLQKYIEIYVQKVNPSRLPXXXXXXXXXXCAEDIIKNLILVVRGQFSTDEL 185
DL YLY N++ +YIE YVQKVNP P C ED IK LIL VR + L
Sbjct: 800 DLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPL 859
Query: 186 VAEVEKRNRLKLLLPWLETRVHEAA 260
V E EKRNRL+LL +LE V E +
Sbjct: 860 VDECEKRNRLRLLTQFLEHLVSEGS 884
>07_03_1251 +
25186333-25188027,25188113-25188208,25188292-25188381,
25188473-25188577,25188764-25188823,25188931-25188993,
25189077-25189172,25189982-25190146,25191104-25191277,
25191387-25191452,25191556-25191654,25192714-25192857,
25193312-25193401
Length = 980
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 272 THNALAKIYIDSNNNPERFLRENQWYDSRVVGRYCEKRDPH 394
TH +A +Y+D+ + +F++EN Y ++ + ++R H
Sbjct: 491 THRLVALVYLDTISRYIKFMQENDQYVPHLLTVFLDERGIH 531
>06_03_0734 -
23980576-23980671,23980799-23981338,23981493-23981714,
23981791-23982144,23982460-23982546
Length = 432
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 562 DQVVQTALSETQDPEDISVTVKAFMTADLPNE 657
D++ A E D +D +V+VK+F T +P E
Sbjct: 50 DEISAAAEDENDDDDDGTVSVKSFETCAMPQE 81
>02_03_0106 + 15292869-15296138
Length = 1089
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 263 RCCLMYSCFQPRKEEFQSIPLFHFSNQFISRKL 165
RC LM+SCF+P S P FH F R++
Sbjct: 103 RCSLMFSCFKP-----ASAPKFHHEIGFTFREI 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,065,001
Number of Sequences: 37544
Number of extensions: 352363
Number of successful extensions: 871
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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