Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021731
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)             164   7e-41
SB_7148| Best HMM Match : MoCF_biosynth (HMM E-Value=3.6e-26)          29   4.9  
SB_20744| Best HMM Match : CH (HMM E-Value=0.92)                       28   8.6  

>SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score =  164 bits (398), Expect = 7e-41
 Identities = 71/84 (84%), Positives = 80/84 (95%)
 Frame = +2

Query: 254 GSNEPATHNALAKIYIDSNNNPERFLRENQWYDSRVVGRYCEKRDPHLACVAYERGQCDR 433
           GS EPATHNA+AKIYIDSNNNPERFLREN +YDSRVVG+YCEKRDPHLAC+AYERGQCD+
Sbjct: 660 GSEEPATHNAMAKIYIDSNNNPERFLRENTFYDSRVVGKYCEKRDPHLACMAYERGQCDQ 719

Query: 434 ELIAVCNDNSLFKTQARYLVRRKD 505
           ELI VCN+NSLFK+ +RYLVRR+D
Sbjct: 720 ELIKVCNENSLFKSLSRYLVRRRD 743



 Score =  135 bits (326), Expect = 4e-32
 Identities = 70/113 (61%), Positives = 82/113 (72%), Gaps = 4/113 (3%)
 Frame = +3

Query: 6   DLVLYLYRNSLQKYIEIYVQKVNPSRLPXXXXXXXXXXCAEDIIKNLILVVRGQFSTDEL 185
           DLVLYLYRN+LQKYIEIYVQKVNPSRLP          C+EDIIK+LI+ VRGQFSTDEL
Sbjct: 577 DLVLYLYRNNLQKYIEIYVQKVNPSRLPVVVGGLLDVDCSEDIIKSLIMAVRGQFSTDEL 636

Query: 186 VAEVEKRNRLKLLLPWLETRVH----EAATNQPHIML*PRSTSIPTTILRDSS 332
           VA+VEKRNRLKLLL WLE R+H    E AT+     +   S + P   LR+++
Sbjct: 637 VAQVEKRNRLKLLLSWLEARIHDGSEEPATHNAMAKIYIDSNNNPERFLRENT 689



 Score =  121 bits (291), Expect = 7e-28
 Identities = 58/69 (84%), Positives = 62/69 (89%)
 Frame = +1

Query: 508 DLWLEVLSEENPYKRQLIDQVVQTALSETQDPEDISVTVKAFMTADLPNELIELLEKIVP 687
           +LW  VL E N Y+RQLIDQVVQTALSETQDPED+S TVKAFMTADLPNELIELLEKIV 
Sbjct: 745 ELWASVLLETNQYRRQLIDQVVQTALSETQDPEDVSCTVKAFMTADLPNELIELLEKIVL 804

Query: 688 DNSVFSDHR 714
           +NSVFSDHR
Sbjct: 805 ENSVFSDHR 813


>SB_7148| Best HMM Match : MoCF_biosynth (HMM E-Value=3.6e-26)
          Length = 501

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 505 SDLWLEVLSEENPYKRQLIDQVVQTALSETQDPEDISVTVKAFMTADLPN-ELIELLEKI 681
           SD   E++ E   + ++    +    +  T D   IS   KAF  + +PN EL E++ KI
Sbjct: 53  SDHEFEIIKEIEEFSKKYDFVITTGGIGPTHDDVTISSIAKAFGESLVPNEELAEVIAKI 112

Query: 682 --VPDNSVFSDH 711
             V  +S+ S H
Sbjct: 113 YRVERSSLNSAH 124


>SB_20744| Best HMM Match : CH (HMM E-Value=0.92)
          Length = 1103

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 231 KEGGVSVYSSFPLQQPIHQSKTVPEQPRSGS 139
           K GG +  S  P+   IHQ K +P++    S
Sbjct: 594 KHGGQTYSSGLPVSNSIHQDKDIPDRANPDS 624


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,931,505
Number of Sequences: 59808
Number of extensions: 407280
Number of successful extensions: 1044
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)