BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021731 (715 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 148 4e-36 Z92809-1|CAB07270.1| 286|Caenorhabditis elegans Hypothetical pr... 33 0.27 Z81104-9|CAB70252.3| 488|Caenorhabditis elegans Hypothetical pr... 29 4.4 AC006810-8|AAK84621.1| 364|Caenorhabditis elegans Hypothetical ... 29 4.4 Z66524-6|CAA91418.2| 408|Caenorhabditis elegans Hypothetical pr... 28 5.8 U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical pr... 28 5.8 >Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein T20G5.1 protein. Length = 1681 Score = 148 bits (358), Expect = 4e-36 Identities = 64/86 (74%), Positives = 76/86 (88%) Frame = +2 Query: 254 GSNEPATHNALAKIYIDSNNNPERFLRENQWYDSRVVGRYCEKRDPHLACVAYERGQCDR 433 G+ + ATHNA+AKIYIDSNNNPERFL+EN +YDS+VVG+YCEKRDPH A ++YERGQCD Sbjct: 871 GATDAATHNAMAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHYAFLSYERGQCDA 930 Query: 434 ELIAVCNDNSLFKTQARYLVRRKDQT 511 ELI VCN+NSLFK ARYLV+R+D T Sbjct: 931 ELINVCNENSLFKNLARYLVKRRDFT 956 Score = 120 bits (289), Expect = 1e-27 Identities = 58/68 (85%), Positives = 63/68 (92%) Frame = +1 Query: 511 LWLEVLSEENPYKRQLIDQVVQTALSETQDPEDISVTVKAFMTADLPNELIELLEKIVPD 690 LW +VL+EEN ++RQLIDQVVQTALSETQDPEDISVTVKAFM ADLPNELIELLEKIV D Sbjct: 957 LWEQVLNEENVHRRQLIDQVVQTALSETQDPEDISVTVKAFMAADLPNELIELLEKIVLD 1016 Query: 691 NSVFSDHR 714 NS FS+HR Sbjct: 1017 NSAFSEHR 1024 Score = 113 bits (272), Expect = 1e-25 Identities = 54/87 (62%), Positives = 64/87 (73%) Frame = +3 Query: 6 DLVLYLYRNSLQKYIEIYVQKVNPSRLPXXXXXXXXXXCAEDIIKNLILVVRGQFSTDEL 185 DLVLYLYRN LQKYIE++VQKVN +RLP C+ED IK LI+ RG+F DEL Sbjct: 788 DLVLYLYRNQLQKYIEVFVQKVNAARLPIVVGALLDVDCSEDAIKQLIINTRGKFDIDEL 847 Query: 186 VAEVEKRNRLKLLLPWLETRVHEAATN 266 V EVEKRNRLKLL WLE+++ E AT+ Sbjct: 848 VEEVEKRNRLKLLNHWLESKIQEGATD 874 >Z92809-1|CAB07270.1| 286|Caenorhabditis elegans Hypothetical protein R17.1 protein. Length = 286 Score = 32.7 bits (71), Expect = 0.27 Identities = 13/42 (30%), Positives = 26/42 (61%) Frame = -3 Query: 254 LMYSCFQPRKEEFQSIPLFHFSNQFISRKLSPNNQDQVLNDV 129 L+ SCF PR ++FQ++ +F N I + S +D +++++ Sbjct: 145 LLLSCFSPRVQDFQAVTCCNFKNIMIKQDESIKLEDLLVSNI 186 >Z81104-9|CAB70252.3| 488|Caenorhabditis elegans Hypothetical protein M199.2 protein. Length = 488 Score = 28.7 bits (61), Expect = 4.4 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Frame = +2 Query: 377 EKRDPHLACVAYERGQCDRELIAVCNDNSLFKTQARYLVR--RKDQTSGSRCSLRRILTR 550 ++ DPH+ C A + C I V D F A YL+ ++Q+ + +R+++T Sbjct: 351 DEADPHMMCYATSQNAC----IYVPIDKDFFDGFAEYLIGGFGQEQSRDLKLQVRKLVTE 406 Query: 551 --GNLLTR 568 GN L R Sbjct: 407 VMGNKLNR 414 >AC006810-8|AAK84621.1| 364|Caenorhabditis elegans Hypothetical protein Y5H2B.1 protein. Length = 364 Score = 28.7 bits (61), Expect = 4.4 Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Frame = -3 Query: 281 HYVWLVRCCLMYSCFQPRKEEFQSIPL------FHFSNQFISRKLSPNNQDQVLNDVFST 120 H +W+ C++Y ++ +K +F +IP F+ S +++S L+ + Q+ N++F Sbjct: 26 HIIWITIICIIYFNWRFKKLDFMAIPYPPAVIKFNTSAKYLSSNLA--SSSQLGNNIFEI 83 Query: 119 INI 111 ++ Sbjct: 84 ASL 86 >Z66524-6|CAA91418.2| 408|Caenorhabditis elegans Hypothetical protein T13H5.2 protein. Length = 408 Score = 28.3 bits (60), Expect = 5.8 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +1 Query: 157 FGDSFRLMNWLLKWKRGID 213 + D F LM WL+ W R ID Sbjct: 45 YDDDFSLMRWLIGWDRKID 63 >U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical protein C18H9.3 protein. Length = 918 Score = 28.3 bits (60), Expect = 5.8 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = -2 Query: 243 LFPAKEGGVSVYSSFPLQQPIHQSKTVPEQPRSGS**CLQHNQHLTSHQLRLADEKD 73 L+PA GGV+++SS ++ +T EQ + N+ L H RLA+E + Sbjct: 462 LYPAAFGGVNMWSSMGQPTDVYMMQTNFEQQL-----VAERNRLLDDHNRRLAEEAE 513 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,376,749 Number of Sequences: 27780 Number of extensions: 306161 Number of successful extensions: 946 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 918 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 946 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1666201324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -