Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021731
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...   148   4e-36
Z92809-1|CAB07270.1|  286|Caenorhabditis elegans Hypothetical pr...    33   0.27 
Z81104-9|CAB70252.3|  488|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
            T20G5.1 protein.
          Length = 1681

 Score =  148 bits (358), Expect = 4e-36
 Identities = 64/86 (74%), Positives = 76/86 (88%)
 Frame = +2

Query: 254  GSNEPATHNALAKIYIDSNNNPERFLRENQWYDSRVVGRYCEKRDPHLACVAYERGQCDR 433
            G+ + ATHNA+AKIYIDSNNNPERFL+EN +YDS+VVG+YCEKRDPH A ++YERGQCD 
Sbjct: 871  GATDAATHNAMAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHYAFLSYERGQCDA 930

Query: 434  ELIAVCNDNSLFKTQARYLVRRKDQT 511
            ELI VCN+NSLFK  ARYLV+R+D T
Sbjct: 931  ELINVCNENSLFKNLARYLVKRRDFT 956



 Score =  120 bits (289), Expect = 1e-27
 Identities = 58/68 (85%), Positives = 63/68 (92%)
 Frame = +1

Query: 511  LWLEVLSEENPYKRQLIDQVVQTALSETQDPEDISVTVKAFMTADLPNELIELLEKIVPD 690
            LW +VL+EEN ++RQLIDQVVQTALSETQDPEDISVTVKAFM ADLPNELIELLEKIV D
Sbjct: 957  LWEQVLNEENVHRRQLIDQVVQTALSETQDPEDISVTVKAFMAADLPNELIELLEKIVLD 1016

Query: 691  NSVFSDHR 714
            NS FS+HR
Sbjct: 1017 NSAFSEHR 1024



 Score =  113 bits (272), Expect = 1e-25
 Identities = 54/87 (62%), Positives = 64/87 (73%)
 Frame = +3

Query: 6    DLVLYLYRNSLQKYIEIYVQKVNPSRLPXXXXXXXXXXCAEDIIKNLILVVRGQFSTDEL 185
            DLVLYLYRN LQKYIE++VQKVN +RLP          C+ED IK LI+  RG+F  DEL
Sbjct: 788  DLVLYLYRNQLQKYIEVFVQKVNAARLPIVVGALLDVDCSEDAIKQLIINTRGKFDIDEL 847

Query: 186  VAEVEKRNRLKLLLPWLETRVHEAATN 266
            V EVEKRNRLKLL  WLE+++ E AT+
Sbjct: 848  VEEVEKRNRLKLLNHWLESKIQEGATD 874


>Z92809-1|CAB07270.1|  286|Caenorhabditis elegans Hypothetical
           protein R17.1 protein.
          Length = 286

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -3

Query: 254 LMYSCFQPRKEEFQSIPLFHFSNQFISRKLSPNNQDQVLNDV 129
           L+ SCF PR ++FQ++   +F N  I +  S   +D +++++
Sbjct: 145 LLLSCFSPRVQDFQAVTCCNFKNIMIKQDESIKLEDLLVSNI 186


>Z81104-9|CAB70252.3|  488|Caenorhabditis elegans Hypothetical
           protein M199.2 protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +2

Query: 377 EKRDPHLACVAYERGQCDRELIAVCNDNSLFKTQARYLVR--RKDQTSGSRCSLRRILTR 550
           ++ DPH+ C A  +  C    I V  D   F   A YL+    ++Q+   +  +R+++T 
Sbjct: 351 DEADPHMMCYATSQNAC----IYVPIDKDFFDGFAEYLIGGFGQEQSRDLKLQVRKLVTE 406

Query: 551 --GNLLTR 568
             GN L R
Sbjct: 407 VMGNKLNR 414


>AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical
           protein Y5H2B.1 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
 Frame = -3

Query: 281 HYVWLVRCCLMYSCFQPRKEEFQSIPL------FHFSNQFISRKLSPNNQDQVLNDVFST 120
           H +W+   C++Y  ++ +K +F +IP       F+ S +++S  L+  +  Q+ N++F  
Sbjct: 26  HIIWITIICIIYFNWRFKKLDFMAIPYPPAVIKFNTSAKYLSSNLA--SSSQLGNNIFEI 83

Query: 119 INI 111
            ++
Sbjct: 84  ASL 86


>Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical
           protein T13H5.2 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 157 FGDSFRLMNWLLKWKRGID 213
           + D F LM WL+ W R ID
Sbjct: 45  YDDDFSLMRWLIGWDRKID 63


>U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical
           protein C18H9.3 protein.
          Length = 918

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -2

Query: 243 LFPAKEGGVSVYSSFPLQQPIHQSKTVPEQPRSGS**CLQHNQHLTSHQLRLADEKD 73
           L+PA  GGV+++SS      ++  +T  EQ         + N+ L  H  RLA+E +
Sbjct: 462 LYPAAFGGVNMWSSMGQPTDVYMMQTNFEQQL-----VAERNRLLDDHNRRLAEEAE 513


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,376,749
Number of Sequences: 27780
Number of extensions: 306161
Number of successful extensions: 946
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)