Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021731
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ...   127   8e-30
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ...   127   8e-30
At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati...    29   2.3  
At1g60220.1 68414.m06782 Ulp1 protease family protein contains P...    29   2.3  
At1g72360.1 68414.m08370 ethylene-responsive element-binding pro...    29   4.0  
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ...    28   5.3  
At1g08620.1 68414.m00955 transcription factor jumonji (jmj) fami...    28   7.1  
At4g26450.1 68417.m03805 expressed protein                             27   9.3  

>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
            Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
            sapiens]
          Length = 1705

 Score =  127 bits (306), Expect = 8e-30
 Identities = 59/84 (70%), Positives = 64/84 (76%)
 Frame = +2

Query: 254  GSNEPATHNALAKIYIDSNNNPERFLRENQWYDSRVVGRYCEKRDPHLACVAYERGQCDR 433
            GS +   HNAL KI IDSNNNPE FL  N +YDS+VVG+YCEKRDP LA VAY RGQCD 
Sbjct: 883  GSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSKVVGKYCEKRDPTLAVVAYRRGQCDE 942

Query: 434  ELIAVCNDNSLFKTQARYLVRRKD 505
            ELI V N NSLFK QARY+V R D
Sbjct: 943  ELINVTNKNSLFKLQARYVVERMD 966



 Score =  100 bits (239), Expect = 1e-21
 Identities = 48/66 (72%), Positives = 55/66 (83%)
 Frame = +1

Query: 508  DLWLEVLSEENPYKRQLIDQVVQTALSETQDPEDISVTVKAFMTADLPNELIELLEKIVP 687
            DLW +VL+EEN Y+RQLIDQVV TAL E++ PE +S  VKAFMTADLP+ELIELLEKIV 
Sbjct: 968  DLWEKVLTEENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVL 1027

Query: 688  DNSVFS 705
             NS FS
Sbjct: 1028 QNSAFS 1033



 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 43/85 (50%), Positives = 50/85 (58%)
 Frame = +3

Query: 6    DLVLYLYRNSLQKYIEIYVQKVNPSRLPXXXXXXXXXXCAEDIIKNLILVVRGQFSTDEL 185
            DL  YLY N++ +YIE YVQKVNP   P          C ED IK LIL VR     + L
Sbjct: 800  DLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPL 859

Query: 186  VAEVEKRNRLKLLLPWLETRVHEAA 260
            VAE EKRNRL+LL  +LE  V E +
Sbjct: 860  VAECEKRNRLRLLTQFLEHLVSEGS 884


>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
            Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
            sapiens]
          Length = 1703

 Score =  127 bits (306), Expect = 8e-30
 Identities = 59/84 (70%), Positives = 64/84 (76%)
 Frame = +2

Query: 254  GSNEPATHNALAKIYIDSNNNPERFLRENQWYDSRVVGRYCEKRDPHLACVAYERGQCDR 433
            GS +   HNAL KI IDSNNNPE FL  N +YDS+VVG+YCEKRDP LA VAY RGQCD 
Sbjct: 883  GSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSKVVGKYCEKRDPTLAVVAYRRGQCDE 942

Query: 434  ELIAVCNDNSLFKTQARYLVRRKD 505
            ELI V N NSLFK QARY+V R D
Sbjct: 943  ELINVTNKNSLFKLQARYVVERMD 966



 Score = 97.5 bits (232), Expect = 8e-21
 Identities = 47/66 (71%), Positives = 53/66 (80%)
 Frame = +1

Query: 508  DLWLEVLSEENPYKRQLIDQVVQTALSETQDPEDISVTVKAFMTADLPNELIELLEKIVP 687
            DLW +VL E N Y+RQLIDQVV TAL E++ PE +S  VKAFMTADLP+ELIELLEKIV 
Sbjct: 968  DLWDKVLDENNDYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVL 1027

Query: 688  DNSVFS 705
             NS FS
Sbjct: 1028 QNSAFS 1033



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 42/85 (49%), Positives = 49/85 (57%)
 Frame = +3

Query: 6    DLVLYLYRNSLQKYIEIYVQKVNPSRLPXXXXXXXXXXCAEDIIKNLILVVRGQFSTDEL 185
            DL  YLY N++ +YIE YVQKVNP   P          C ED IK LIL VR     + L
Sbjct: 800  DLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPL 859

Query: 186  VAEVEKRNRLKLLLPWLETRVHEAA 260
            V E EKRNRL+LL  +LE  V E +
Sbjct: 860  VEECEKRNRLRLLTQFLEHLVSEGS 884


>At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative
           (PAUSED) contains Pfam profile: PF04150 exportin-t,
           identical to PAUSED gi:30909318
          Length = 988

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 272 THNALAKIYIDSNNNPERFLRENQWYDSRVVGRYCEKRDPH 394
           +H  +A +Y+++     +F++EN  Y   V+G + + R  H
Sbjct: 500 SHRLVALVYLENITRYMKFIQENSQYIPNVLGAFLDDRGLH 540


>At1g60220.1 68414.m06782 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 604

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = -3

Query: 341 DFP*GISQDCCWNRCRSWLEHYVWLVRCCLMYSCFQPRKEEFQSIPLFHFSNQFISRKLS 162
           + P G+ +D C+        H+V +  C     C  PR  E+ + P+ +F  +F+ +++S
Sbjct: 343 ELPEGLQEDICYPTRDD--PHFVQV--CLKDLECLAPR--EYLTSPVMNFYMRFLQQQIS 396

Query: 161 PNNQ 150
            +NQ
Sbjct: 397 SSNQ 400


>At1g72360.1 68414.m08370 ethylene-responsive element-binding
           protein, putative contains Pfam profile: PF00847 AP2
           domain; similar to ethylene responsive element binding
           protein (GI:18496063)[Fagus sylvatica]
          Length = 211

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
 Frame = +2

Query: 296 YIDSNNNPERFLRENQWYDSRVVGRYCEKRDPHLACVAYERGQCDRELIAVCNDNSLFKT 475
           ++   NNP+  L + QW +  ++G   +K +P+    + E    D  L++   +   F+ 
Sbjct: 122 FLWEENNPDTLLIDTQWLEDIIMGDANKKHEPN---DSEEANNVDASLLS--EELLAFEN 176

Query: 476 QARYLVRR--KDQTSGSRCSLRRILTRGNLLTRW 571
           Q  Y  +    +    S  SL  +   GN +  W
Sbjct: 177 QTEYFSQMPFTEGNCDSSTSLSSLFDGGNDMGLW 210


>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 541

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 429 SHCPRSYATHAKCGSR 382
           S CP SYA H++C +R
Sbjct: 210 SRCPSSYAVHSRCATR 225


>At1g08620.1 68414.m00955 transcription factor jumonji (jmj) family
            protein / zinc finger (C5HC2 type) family protein
            contains Pfam domains, PF02375: jmjN domain, PF02373:
            jmjC domain and PF02928: C5HC2 zinc finger
          Length = 1183

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 308  NNNPERFLRENQWYDSRVVGRY-CEKRDPHLACVAYERGQCDRELI 442
            NN+P+RF+R+     ++VV R  C        CV   +  C R  I
Sbjct: 931  NNSPDRFIRQKGPRIAKVVRRINCNVEPLSYGCVLSGKSWCSRRAI 976


>At4g26450.1 68417.m03805 expressed protein
          Length = 1248

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 291 RSTSIPTTILRDSSGKISGM 350
           RS S P++ILRD+S K SG+
Sbjct: 409 RSNSFPSSILRDNSEKESGL 428


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,603,923
Number of Sequences: 28952
Number of extensions: 287596
Number of successful extensions: 803
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)