Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021729
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    29   0.76 
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   3.1  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   7.1  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   9.4  

>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 305 PFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVV 484
           P  +L   P  P+    PD + L Q +L+    LC        V  L  + +T+L ++ V
Sbjct: 213 PLTVLTQNPNLPKLLERPDINDLHQGILQELDSLCNCLGSSLDVKKLSKQRETLLSHMQV 272

Query: 485 AP 490
            P
Sbjct: 273 NP 274


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 260 GRPPFNRPRVLMLRPPFDLLLAEPAFPRCKPAPDDSVLTQ 379
           G PP   P +   R   +     P FPR  PA  DSV+ +
Sbjct: 303 GIPPLTTPSLYSQRLSNNYDSTTPGFPRFSPANFDSVINK 342


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 498 NSPGATTILSNTVCSFVTRL-KTAA*SVG 415
           ++ G TT  SN+  SF+TRL  TAA S G
Sbjct: 776 SASGITTTASNSRDSFITRLPPTAALSTG 804


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 242 PRSGRMGRPPFNRPRVL 292
           P   + GRPP N+P++L
Sbjct: 308 PVKRKRGRPPLNKPKIL 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,797
Number of Sequences: 5004
Number of extensions: 47983
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)