Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021729
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0805 - 7166265-7166759                                           33   0.15 
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700...    31   0.60 
11_01_0674 - 5502275-5502954,5503054-5504746                           29   2.4  
10_08_0851 - 21065832-21065948,21066361-21066705,21067181-210674...    28   7.4  
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728...    27   9.7  
01_02_0078 - 10894871-10895841,10897268-10898426                       27   9.7  

>11_01_0805 - 7166265-7166759
          Length = 164

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
 Frame = +2

Query: 242 PRSGRMG-------RPPFNRPRVLMLRPPFDLLLAEPAFPRCKP--APDDSVLTQALLKR 394
           PR GR+G       +P  +RP++  +RP    LLA  A P   P  +P  S   Q +   
Sbjct: 44  PRRGRLGVHNPPAFKPTPHRPKLPTIRPEHPRLLAGFASPPSPPSLSPWCSGAGQCVQNM 103

Query: 395 HTELCPSPTDQAAVLS 442
             EL PSPT  ++ L+
Sbjct: 104 QDELPPSPTSASSTLA 119


>10_03_0010 +
           7007694-7007888,7007994-7008059,7008161-7008334,
           7009232-7009306,7009384-7009510,7012280-7012371,
           7012496-7012566,7012683-7012792,7013016-7013053,
           7013825-7013960,7014382-7014456,7014574-7014697,
           7014917-7015013,7015426-7015451,7016180-7016255,
           7016499-7016636,7016735-7016872
          Length = 585

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 278 RPRVLMLRPPFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELC-PSPTDQAAVL 439
           R R +   PP   +L + +FP   PA D  +L   L +RH   C P P     V+
Sbjct: 9   RARAVPSAPPPPFILRQLSFPAAVPALDLDILCCRLSRRHRLACLPQPPSDVLVV 63


>11_01_0674 - 5502275-5502954,5503054-5504746
          Length = 790

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 642 NLIGESLDSLFRWQGFHDDHDISNVLPG 559
           NL+ ESL  ++ WQ F D  D+  VLPG
Sbjct: 155 NLVIESLSDVYLWQSFDDATDL--VLPG 180


>10_08_0851 -
           21065832-21065948,21066361-21066705,21067181-21067489,
           21067574-21067648,21067754-21067917,21067994-21068432
          Length = 482

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 280 TPSLDASSALRPFTSRTRFS*MQTGSRRLRAHSGP 384
           TPS+DA +  R F+  + FS    GS     HSGP
Sbjct: 27  TPSMDAVNLSRTFSDVSSFSEEHGGSGSSVDHSGP 61


>02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,
            7281182-7281277,7281378-7281459,7281553-7283037,
            7283376-7283450,7283521-7283598,7283708-7283791,
            7283885-7283965,7284073-7284291,7284398-7284648,
            7284748-7284796
          Length = 997

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 346  QTGSRRLRAHSGPSKEAHRAMSVTYRS-SSCFEPRHETADSI 468
            QTGS +     GP K   +   V YR+ +  F   H+  D+I
Sbjct: 920  QTGSGKTYTMMGPEKATEKEWGVNYRALNDLFNISHDRRDTI 961


>01_02_0078 - 10894871-10895841,10897268-10898426
          Length = 709

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 504 PATRRSAASWVLQEGDNDGREERC*YRGHHENLANER 614
           P+   SA SW  ++GD +G+  RC   G H  +   R
Sbjct: 490 PSASSSAPSWGEEDGDVEGQPPRC---GRHRPIRRAR 523


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,823,269
Number of Sequences: 37544
Number of extensions: 351464
Number of successful extensions: 757
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)