Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021729
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)                 48   5e-06
SB_41218| Best HMM Match : zf-C2H2 (HMM E-Value=0.68)                  29   4.3  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               28   5.7  
SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)           27   9.9  
SB_46699| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)           27   9.9  
SB_7389| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)            27   9.9  

>SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)
          Length = 513

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
 Frame = +2

Query: 245 RSGRMGRPPFNRPRVLMLRP--PFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSP 418
           R GR GR    RP   M  P  P   +++   F        D +L  ALLKR+T+L PS 
Sbjct: 341 RMGRGGRGGPGRPMPYMRGPMGPQRFIVSHATF--------DPIL--ALLKRNTKLTPSQ 390

Query: 419 TDQAAVLSLVTKLQTVLDNIVVAP 490
            +QA V +LVTK+ +VLDN++V P
Sbjct: 391 QEQALVQNLVTKVTSVLDNLIVDP 414



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 21/33 (63%), Positives = 27/33 (81%)
 Frame = +1

Query: 511 LEEVRQVGSYKKGTMMAGKNVADIVVIMKTLPT 609
           +EEVR VGS+KKGTM+ G  +AD+ VI+K LPT
Sbjct: 421 VEEVRAVGSHKKGTMLLGHPIADLTVILKRLPT 453


>SB_41218| Best HMM Match : zf-C2H2 (HMM E-Value=0.68)
          Length = 807

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/72 (22%), Positives = 26/72 (36%)
 Frame = +1

Query: 373 HSGPSKEAHRAMSVTYRSSSCFEPRHETADSIRQYCCGSGRICSLQLEEVRQVGSYKKGT 552
           H+G     H    V      C        D    +CC  GR+C  ++     + ++  GT
Sbjct: 389 HAGKHVIEHEGYRVMRCKLKCIRANGRVTDCSHYHCCLCGRVCLRKVHLCCHLQAHALGT 448

Query: 553 MMAGKNVADIVV 588
                +V D V+
Sbjct: 449 AKVVDDVNDDVM 460


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 305 PFDLLL-AEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTV 466
           PF L++ AE    R KPAP        +   H  L P P     + S+V K Q V
Sbjct: 417 PFALVMEAEREHARAKPAPVQDRNEAKITTEHVRLTPVPGIVVKIESMVDKPQFV 471


>SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 410 PSPTDQAAVLSLVTKLQTVLDNIVVAPGEF 499
           PSP      L  VT ++ +LD +  +PGEF
Sbjct: 48  PSPQTTGPDLEAVTFVKDILDQLTESPGEF 77


>SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
          Length = 1541

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +2

Query: 317 LLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVVAPGE 496
           LL    FPRC   P+   LT   +   ++ C +   Q + L +V +   V  + ++A   
Sbjct: 628 LLENLKFPRCLKPPNFGTLTSTQVCNFSDACHNGIGQVSYLRMVNEKGEVHVSFLMAKSR 687

Query: 497 FA 502
            A
Sbjct: 688 VA 689


>SB_46699| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
          Length = 517

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +2

Query: 317 LLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVVAPGE 496
           LL    FPRC   P+   LT   +   ++ C +   Q + L +V +   V  + ++A   
Sbjct: 286 LLENLKFPRCLKPPNFGTLTSTQVCNFSDACHNGIGQVSYLRMVNEKGEVHVSFLMAKSR 345

Query: 497 FA 502
            A
Sbjct: 346 VA 347


>SB_7389| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
          Length = 308

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +2

Query: 317 LLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVVAPGE 496
           LL    FPRC   P+   LT   +   ++ C +   Q + L +V +   V  + ++A   
Sbjct: 77  LLENLKFPRCLKPPNFGTLTSTQVCNFSDACHNGIGQVSYLRMVNEKGEVHVSFLMAKSR 136

Query: 497 FA 502
            A
Sbjct: 137 VA 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,421,343
Number of Sequences: 59808
Number of extensions: 389135
Number of successful extensions: 897
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)