Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021729
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93386-4|CAB07644.1|  370|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z74473-4|CAA98953.1|  390|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z50872-3|CAA90756.1|  238|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z93386-4|CAB07644.1|  370|Caenorhabditis elegans Hypothetical
           protein R11H6.5 protein.
          Length = 370

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 496 ICSLQLEEVRQVGSYKKGTMMAGKNVADIVVIMKTLPTKEAVEGLSNKV 642
           +  + +  +  VGS+   T     + +D+VV + TLP+ E V  L  KV
Sbjct: 82  LVDIGIATISHVGSFVTDTTTHSSDKSDVVVQLSTLPSYETVAELGRKV 130


>Z74473-4|CAA98953.1|  390|Caenorhabditis elegans Hypothetical
           protein F56H9.4 protein.
          Length = 390

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 52  RKCPINTIRTLYKLVRNNN*RKIRENTTSMSLTFQVQ 162
           R C +  IR  +  + NN  RKI ++ TS + T ++Q
Sbjct: 334 RDCALEYIRVQFISLNNNKNRKIYQHVTSATDTARIQ 370


>Z50872-3|CAA90756.1|  238|Caenorhabditis elegans Hypothetical
           protein C05D12.5 protein.
          Length = 238

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +2

Query: 41  IETAESVRLIQ--FEHYISSCVTIIKEKLEKTQL 136
           +ETAES R ++    H  + C+T++KE +E  +L
Sbjct: 154 LETAESKRKLKERINHMETHCMTMLKETMEDNKL 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,218,147
Number of Sequences: 27780
Number of extensions: 291692
Number of successful extensions: 677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)