Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021729
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27810.1 68417.m03995 hypothetical protein                          34   0.071
At5g61120.1 68418.m07668 expressed protein                             28   4.7  
At3g21055.1 68416.m02661 photosystem II 5 kD protein, putative i...    28   4.7  
At5g53440.1 68418.m06641 expressed protein                             28   6.1  
At5g48090.1 68418.m05941 expressed protein ; expression supporte...    27   8.1  

>At4g27810.1 68417.m03995 hypothetical protein 
          Length = 182

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 379 GPSKEAHRAMSVTYRSSSCFEPRHETADSIRQYCCGSGRICSLQLEEVRQVGS 537
           GP     R++SV  RS    E R E + S    CC  G   ++++  VR+ GS
Sbjct: 104 GPYDVPRRSLSVIRRSERASEGRFEFSRSTNSRCCDGGGGTTVKISRVRRKGS 156


>At5g61120.1 68418.m07668 expressed protein 
          Length = 326

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 251 GRMGRPPFNRPRVLMLRPPFDLLLAEPAFPRCK 349
           G   +P F  PR +  RPP  L      FPR +
Sbjct: 16  GSTSKPTFRVPRPVSARPPMGLTKPTAGFPRAR 48


>At3g21055.1 68416.m02661 photosystem II 5 kD protein, putative
           identical to Swiss-Prot:Q39195 photosystem II 5 kDa
           protein, chloroplast precursor (PSII-T) [Arabidopsis
           thaliana]
          Length = 103

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
 Frame = +1

Query: 382 PSKEAHRAMSVTYRSSS----CFEPRHETADSIRQ---YCCGSGRICSLQLEEVRQVGSY 540
           PS    R +SV   S+S      E + +++ ++R+   +   +  +CSL    + +    
Sbjct: 18  PSATGGRRLSVVRASTSDNTPSLEVKEQSSTTMRRDLMFTAAAAAVCSLAKVAMAEEEEP 77

Query: 541 KKGTMMAGKNVADIVVIMKT 600
           K+GT  A K  A + V M T
Sbjct: 78  KRGTEAAKKKYAQVCVTMPT 97


>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 376 SGPSKEAHRAMSVTYRSSSCFEPRHETADSIRQYC 480
           + P+KE H +   T    +  +P  ET D+  +YC
Sbjct: 820 TSPAKELHASSPKTMEEVAADDPVSETIDNTERYC 854


>At5g48090.1 68418.m05941 expressed protein ; expression supported
           by MPSS
          Length = 636

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +1

Query: 451 ETADSIRQYCCGSGRICSLQLEEVRQVGS---YKKGTMMAGKN 570
           E  D++  +CCGS     L  E++ + G    YK   ++  KN
Sbjct: 429 ENGDTVVDFCCGSNDFSCLMKEKLMETGKICFYKNLDLIPPKN 471


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,396,264
Number of Sequences: 28952
Number of extensions: 268742
Number of successful extensions: 587
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)