Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021728
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    33   0.058
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.2  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   2.9  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    26   5.1  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   6.7  

>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -1

Query: 346 PNMFFNSMNINTSLVNKHG*QHKAHST-TRNASIKKPYASLFSH*TKVETT 197
           P + FNS++INT++   +    K +S  T+N+S + P+  +FS  +   TT
Sbjct: 319 PILRFNSLSINTNVARNYLSSEKGYSAHTQNSSAQSPHPRVFSANSAFSTT 369


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 627 TSEPPTLISLSSPMFPYFLDVSP*INPIPVELAYIHIVTVQCSH 496
           T  PP       P FP F  +SP  +P    L Y ++ T Q SH
Sbjct: 48  TQAPPHTNPQGPPPFPLFNSISPVYDPATGRLLYRNVNT-QVSH 90


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 608 KVGGSEVSLELPKDGSPVESSRKRKLRIKK 697
           ++G  E+SLE P D    E + K KL ++K
Sbjct: 130 RLGVGEISLEKPSDEQKQEVANKTKLALQK 159


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = -1

Query: 658 RGTIFRQLQAYFRTSNFNILEFPHVPVLSRRFSVNKSDPS*VSIYTHCHSSMQPRF 491
           R  I  QL  +   ++F  LEF  +PV +  + +  + P  V        +  P F
Sbjct: 305 RDIIVGQLYGHMNINHFVFLEFDKLPVDTESYGIKSAQPKYVKSLIDAQYAELPTF 360


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 445 VYRLLERVYLQGVRFGCRQMV 383
           VYRLL  ++L    F C QM+
Sbjct: 278 VYRLLRHLFLDATAFSCCQML 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,753
Number of Sequences: 5004
Number of extensions: 65170
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)