Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021728
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0464 - 3431298-3431315,3431586-3433339,3433340-3433589,343...    30   1.7  
03_06_0126 + 31865339-31867943,31868176-31868660                       29   3.0  
03_02_0246 - 6772369-6772808,6773223-6775788                           29   3.0  
01_06_0125 + 26711157-26713297,26715026-26715206                       29   4.0  
10_01_0251 + 2641320-2643272                                           29   5.3  
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023...    28   7.0  

>01_01_0464 -
           3431298-3431315,3431586-3433339,3433340-3433589,
           3433716-3434041,3434297-3434618
          Length = 889

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 557 YGETSRKYGNMGELKDIKVGGSEVSLELP 643
           YGE     GN+  LK++ VG S+ S ELP
Sbjct: 220 YGEIPSSIGNLKYLKNLGVGASQFSGELP 248


>03_06_0126 + 31865339-31867943,31868176-31868660
          Length = 1029

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 542 GIGFIYGETSRKYGNMGELKDIKVGGSEVSLELPKDGSPVESSRK 676
           G  F  GE   +YG  G ++ + V G+E+S ++P +   + S R+
Sbjct: 175 GGNFFSGEIPPEYGRWGRMQYLAVSGNELSGKIPPELGNLTSLRE 219


>03_02_0246 - 6772369-6772808,6773223-6775788
          Length = 1001

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 542 GIGFIYGETSRKYGNMGELKDIKVGGSEVSLELPKD 649
           G  F +G   R YG    +K + + G+E++ E+P +
Sbjct: 161 GGNFFFGSIPRSYGQWSRIKYLALSGNELTGEIPPE 196


>01_06_0125 + 26711157-26713297,26715026-26715206
          Length = 773

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 539 TGIGFIYGETSRKYGNMGELKDIKVGGSEVSLELPKDGSPVESSRKRKLRIKKPS 703
           TGI  ++  + R      EL+++  GG E+S +L  +GSP    +    R +K S
Sbjct: 509 TGIATVHPLSIRNLSGP-ELRNLNKGGGELSKKLVVEGSPKYGEKNNDARSEKNS 562


>10_01_0251 + 2641320-2643272
          Length = 650

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 421 YLQGVRFGCRQMVVELFGFHLFMKTPNMFFNSMNINTSLVN 299
           YL+ +R   +Q   E FG+HLF +T N F    +  T++++
Sbjct: 287 YLRMLRKMSQQAPQENFGWHLFAETQNDFKKQSHQGTNIIS 327


>06_03_0668 +
           23301578-23301791,23302102-23302199,23302233-23302301,
           23302674-23302961,23303045-23303208,23303344-23303599,
           23303706-23303816,23304109-23304195,23305916-23305985,
           23306093-23306149,23306309-23306426,23307314-23307403,
           23307492-23307671,23307816-23307893,23308016-23308088
          Length = 650

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 581 GNMGELKDIKVGGSEVSLELPKDGSPVESSRKRKLRIKKPSVHLCRKIT 727
           GN  ++K+ +V    V+    K+    E S K     +KP ++L RK+T
Sbjct: 552 GNKVDMKNRQVKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLT 600


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,599,113
Number of Sequences: 37544
Number of extensions: 369595
Number of successful extensions: 964
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)