Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021728
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)                 29   3.1  
SB_35913| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   3.1  
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_21988| Best HMM Match : DNA_primase_S (HMM E-Value=0.0096)          28   9.5  

>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
          Length = 273

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 533 NSTGIGFIYGETSRKYGNMGELKDIKVGGSEVSLELPKDGSPVESSRKRKLRIKK 697
           +S G GF+  + S  Y     L    +GG ++++E+   G      RK KL+ KK
Sbjct: 112 SSKGCGFLEIDDSIGYTKALNLHHSYLGGRKINVEVTCGGGGSSDKRKEKLQEKK 166


>SB_35913| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1176

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = -2

Query: 639 SSKLTSEPPTLISLSSPMFPYFLDVS 562
           +++L ++PPT+ +++SP  P F DV+
Sbjct: 546 TNRLRTDPPTISAMTSPRMPPFADVT 571


>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 572 RKYGNMGELKDIKVGGSEVSLELPKDGSPV 661
           R YG +    ++ +G  E+ + LP +G PV
Sbjct: 420 RVYGKLATSGELNIGSGELEVSLPLNGRPV 449


>SB_21988| Best HMM Match : DNA_primase_S (HMM E-Value=0.0096)
          Length = 153

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 598 QGY*SWRFGSKLGAAERWFPC*ELPKTEAPDKETERPLMQEDYLR 732
           Q Y  W F  KL    +W    ++PKT  P++E    L  + YLR
Sbjct: 37  QQYYKWLFPYKL--YHQWLSYGDVPKTYFPNREFSFTLKDDVYLR 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,112,584
Number of Sequences: 59808
Number of extensions: 450291
Number of successful extensions: 1765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1764
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)