Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021728
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical p...    30   1.6  
U23517-2|AAB93337.1|  243|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81096-1|CAB03161.3|  478|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z82053-3|CAB04837.2|  240|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    28   6.3  

>Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical
           protein T09E11.4 protein.
          Length = 671

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -1

Query: 529 IYTHCHSSMQPRFDACMRTMTL*CLFSVV-YRLLERVYLQGVRFGCRQMVVELFGFHLFM 353
           IY +C  S           + +  L SVV Y   ER YL+        +VV LF  +L +
Sbjct: 307 IYAYCKLSYPESISVLTTGLIVSILMSVVLYETFERWYLKLSNINVAILVVALFTSNLIL 366

Query: 352 KTPNMFFNSMNINT 311
              +  FN+  I T
Sbjct: 367 IYKDSIFNTTEIPT 380


>U23517-2|AAB93337.1|  243|Caenorhabditis elegans Hypothetical
           protein D1022.4 protein.
          Length = 243

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +2

Query: 278 LVLLTVFVY**CVDIHRVKKHVWCFHKEMETKKFNYHLSTSKTNALKIYT 427
           +V  TV+V+    D H  K  V  FH+EM T++ ++ +  S  NA+  +T
Sbjct: 161 IVGTTVYVHHGDADFHIAKDQVDGFHEEMRTRQADF-VFVSHANAVHAFT 209


>Z81096-1|CAB03161.3|  478|Caenorhabditis elegans Hypothetical
           protein K03H4.1 protein.
          Length = 478

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 8   VLRLRNYNL*DFLAFLSKIERSIVTNCRSKPKNRCRDVISAKV 136
           +++  N+N  DF  F+   E SI+    ++    CR+++  KV
Sbjct: 259 IIKEDNHNFEDFAHFMQSHEESILCGFNARNSRECRELMYKKV 301


>Z82053-3|CAB04837.2|  240|Caenorhabditis elegans Hypothetical
           protein T26E3.4 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +2

Query: 542 GIGFIYGETSRKYGNMGELKDIKVGGSEVSLELPKDGSPVESSRKRKLRIKKPSVHLCRK 721
           G+  ++   S     +GEL D+K    E  +E+ K+    ES +K +  +  P      K
Sbjct: 101 GMVMVFAIVSALQDEIGELVDVKKRAKEEKVEIEKEKKEAESRKKFEGTVVTPDTFRAWK 160

Query: 722 ITF 730
             F
Sbjct: 161 DRF 163


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 663 STGEPSFGSSKLTSEPPTLISLSSPMFPYFLDVSP 559
           S+  P FG+ K T+ PPT +  + P+ P  +  +P
Sbjct: 625 SSVAPLFGAPKTTAPPPTTVPATIPVAPTTIASAP 659


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,856,081
Number of Sequences: 27780
Number of extensions: 354900
Number of successful extensions: 1011
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)