Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021728
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   7.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 675 FRELSTGEPSFGSSKLTSEPPTLISLSSPMFPYFLD 568
           F    T   SFG  K+ +  PTL S  +P FP  +D
Sbjct: 339 FARKKTDYSSFG--KILATEPTLFSNVTPKFPRNID 372


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 367 FHLFMKTPNMFFNSMNINTSLVN 299
           F + +KTP   +NS N   +L N
Sbjct: 95  FFMMIKTPIFIYNSFNTGFALGN 117


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 520 HCHSSMQPRFDACMRT 473
           HC   MQPR   C R+
Sbjct: 388 HCELHMQPRKKNCCRS 403


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 520 HCHSSMQPRFDACMRT 473
           HC   MQPR   C R+
Sbjct: 388 HCELHMQPRKKNCCRS 403


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 221 TLNESRNYIINVKNKHSY 168
           T++ + NY  N  NK++Y
Sbjct: 89  TIHNNNNYKYNYNNKYNY 106


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 594 NSRILKLEVRK*AWSCR 644
           N+R+++L +    WSCR
Sbjct: 913 NARLVELSLGSNPWSCR 929


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 153 NVYQQTTFADMTSRHRFLGFERQLVTIERSIFERNAKK 40
           N Y   TF  +TS+H    ++  +  +ER + + + +K
Sbjct: 588 NNYPVHTFGRLTSKHDNSLYDEYIPFLERELRKAHQEK 625


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,357
Number of Sequences: 438
Number of extensions: 4502
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)