Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021728
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49660.1 68418.m06147 leucine-rich repeat transmembrane prote...    30   1.5  
At3g51895.1 68416.m05692 sulfate transporter (ST1) identical to ...    30   1.5  
At3g15600.1 68416.m01976 hypothetical protein low similarity to ...    29   3.4  
At2g07770.1 68415.m01005 hypothetical protein low similarity to ...    29   3.4  
At2g25460.1 68415.m03049 expressed protein                             28   5.9  

>At5g49660.1 68418.m06147 leucine-rich repeat transmembrane protein
           kinase, putative contains leucine rich repeat (LRR)
           domains, Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 966

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +2

Query: 554 IYGETSRKYGNMGELKDIKVGGSEVSLELPKDGSPVESSRKRKL 685
           ++G   R  GN+  L D+++ G+ +S E+PK+   + + R+ +L
Sbjct: 207 LHGNIPRSIGNLTSLVDLELSGNFLSGEIPKEIGNLSNLRQLEL 250


>At3g51895.1 68416.m05692 sulfate transporter (ST1) identical to
           sulfate transporter [Arabidopsis thaliana] GI:2285885
          Length = 658

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +3

Query: 72  RLLPTVVRNPKIDVVTSYPQK*FVGKH----WNFF*IGMFIFNVDYVVSTF 212
           R L  V+ NPK +VV    +  F+G H    W F  +G  +    Y++ TF
Sbjct: 594 RALKLVLSNPKGEVVKKLTRSKFIGDHLGKEWMFLTVGEAVEACSYMLHTF 644


>At3g15600.1 68416.m01976 hypothetical protein low similarity to KED
           [Nicotiana tabacum] GI:8096269; contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 591

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 599 KDIKVGGSEVSLELPKDGSPVESSRKR 679
           KDI+V  SE   E+P+D    E S+KR
Sbjct: 513 KDIEVADSEKEKEVPQDAKVAEPSKKR 539


>At2g07770.1 68415.m01005 hypothetical protein low similarity to KED
           [Nicotiana tabacum] GI:8096269; contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 518

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 599 KDIKVGGSEVSLELPKDGSPVESSRKR 679
           KDI+V  SE   E+P+D    E S+KR
Sbjct: 440 KDIEVADSEKEKEVPQDAKVAEPSKKR 466


>At2g25460.1 68415.m03049 expressed protein
          Length = 423

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +2

Query: 578 YGNMGELKDIKVGGSEVSLELPKDGSPVESSRKRKLRIKKPSVHLCRKITFVTISTFT 751
           YG   + K+ K    + SL+L +  S  ES+ +RKL I+     L ++ T V   TF+
Sbjct: 101 YGENMDAKNKKSLIGKASLDLSELASKQESTVERKLPIRSKGSVLSKEATLVVNVTFS 158


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,621,141
Number of Sequences: 28952
Number of extensions: 320490
Number of successful extensions: 838
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)