Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021727
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 29 0.81
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 28 1.4
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 1.9
SPBC27B12.14 |||mitochondrial membrane protein complex assembly ... 26 4.3
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 25 7.6
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.6
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 25 10.0
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 10.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 10.0
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 10.0
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 28.7 bits (61), Expect = 0.81
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +1
Query: 205 SIVGTGYRGERLIEPSRAGSVRSFPQDSWRRYKILKQSHPVKRMIRGIGAETTSTYSQ 378
SIV Y GE ++ ++ + F + S + YK L Q + VK ++ + +ET S+Y++
Sbjct: 1057 SIVQFHY-GEDSLDVTKQKHLTQF-EFSAKNYKSLIQKYKVKSVLSAVDSETASSYAK 1112
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -3
Query: 354 GPNASNHSLYRMRLF*NFISTPAILRETSDGTSSRWFD*SFAPIPSSDDRF 202
GP +NHS + + T + LR S +S +F P+PSSDD F
Sbjct: 160 GPVRTNHSSSLSNSSNSLLQTESSLRPNSSFVNSPFF-----PLPSSDDLF 205
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +1
Query: 7 RRSLREDEIIELRS*FSHSRGVSFPISE*RRALSTNAGTRKMVNYAWSGRSQGKP*WRTV 186
RR+L D + L + SH ++ + R L+ + G +++N +GR Q T+
Sbjct: 25 RRALDCDSEMSLMNSLSHLVYLTSTSPKIREILTMDGGLMRLMNILRAGRGQTFA-RMTI 83
Query: 187 ATLTCKSIVGTGYRGERLI 243
L + +V G RG I
Sbjct: 84 WQLALQCVVNVGIRGSEAI 102
>SPBC27B12.14 |||mitochondrial membrane protein complex assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 72
Score = 26.2 bits (55), Expect = 4.3
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 208 IVGTGYRGERLIEPSRAGSVRSFPQDSWRRYKILK----QSHPVKRMI 339
IVG GY +L PS V S P D Y++ K Q+ V RMI
Sbjct: 14 IVGFGYMTMKLTTPSPERVVNSLPPDLRASYEMNKKDRSQAEGVLRMI 61
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 272 LRTEPALDGSISLSPLYPVPTIDLHVRVAT 183
L +PA +SL + +P++DLHV +++
Sbjct: 120 LAEDPAFIPEVSLYDAFNLPSVDLHVDMSS 149
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 523 P*AFFGALTLRLVHPTAPVLLTKIG 449
P + G LR V+P +P+LLT G
Sbjct: 319 PYSLIGHKELRFVYPISPILLTLAG 343
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 381 FKWVRTPAYSNDEAGDL 431
F ++ P YS D+AGDL
Sbjct: 443 FSALKVPVYSTDDAGDL 459
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 122 VPAFVLRARLHSLIGNETPRECENH 48
VP FV LH G++TP C H
Sbjct: 622 VPGFVSSPNLHLAGGSDTPIYCIEH 646
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -3
Query: 297 STPAILRETSDGTSSRWFD*SFAPIPSSDDRFARQSRYGPPSGFPLTST 151
STP I TS +S+ S +P+PS+ + P G ST
Sbjct: 84 STPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLST 132
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 208 SICTSESLRSSIRVSPDFDLTRHSSPSFGSQHLCS 104
S TS S ++SI S + + HSSPSF + L S
Sbjct: 460 SPATSPSNQASIHASFTKESSTHSSPSFTLESLFS 494
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,217
Number of Sequences: 5004
Number of extensions: 64091
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -