Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021727
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490...    28   5.9  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    28   7.8  
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501...    28   7.8  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    28   7.8  
02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483...    28   7.8  

>07_03_1231 +
           25047067-25047262,25047876-25048045,25048897-25049030,
           25049122-25049369,25049799-25049904,25049992-25050130,
           25050258-25050385,25050472-25050733
          Length = 460

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 462 LPKLAHLAPSSDLRLHRSSKPEFSPI 385
           L  L +LAP  DLR+  SSKP F  I
Sbjct: 259 LETLVNLAPVLDLRIFSSSKPSFIKI 284


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 627 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 544
           G+LLR  +   LLS  RL   P PP CCH R
Sbjct: 63  GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92


>04_03_0897 -
           20646750-20646918,20647927-20648038,20649650-20650108,
           20650237-20650330,20650449-20650525,20650637-20650688,
           20650770-20650927,20651191-20651281,20651465-20652529
          Length = 758

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +3

Query: 129 DGELCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKT 239
           DG+  +V + SGE    D+S  ++Q+D+  ++ G+K+
Sbjct: 436 DGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKS 472


>04_03_0018 -
           9434088-9434141,9434211-9434282,9434968-9435062,
           9435445-9435526,9435610-9435660,9435749-9435829,
           9435965-9436006,9436117-9436215,9438130-9438201,
           9438557-9438680,9438850-9439723,9440274-9440456,
           9440941-9442741,9442825-9443049,9443117-9443814,
           9444519-9444591
          Length = 1541

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = -3

Query: 225 IPSSDDRFARQSRYGPPSGFPLTST*PGIVHHLSGPSI 112
           IP S  R    S YGPP   P TS     V  L  PS+
Sbjct: 761 IPCSSGRDDFASSYGPPPNIPCTSLRTSKVSSLVHPSL 798


>02_02_0664 -
           12747888-12747900,12748161-12748229,12748332-12748395,
           12749540-12749558,12749777-12749843,12749934-12749953,
           12750079-12750248,12751646-12751823
          Length = 199

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 305 ILYRRQLS*GKLRTEPALDGSISLSPLYPVP 213
           ++YRRQ   G+ R  P L  S S +PLY  P
Sbjct: 39  MMYRRQERGGRTRIWPGLHWSDSSTPLYCAP 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,350,381
Number of Sequences: 37544
Number of extensions: 475086
Number of successful extensions: 1029
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)