Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021727
         (674 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    25   2.9  
AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.          23   8.8  
AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.          23   8.8  
AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.          23   8.8  
AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.          23   8.8  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 32  LSSYVRD----FRTPEASRFQSVNEGAL*AQMLGPERW*TM-PGQVEVRGNPD 175
           + SY +D    + T E    +SV  G     +LGP  W TM  G +++   PD
Sbjct: 600 IHSYFQDRELVYETSEGPVVRSVTAGVPQGSILGPTLWNTMYDGVLDIALPPD 652


>AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 536 GVGRS*QQDGGHGSRNPLRSVQRLTCRSNQ 625
           G G +    GG GS  P    + L C+ N+
Sbjct: 253 GTGGTGTSSGGGGSFQPPTLTEELLCKHNE 282


>AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 536 GVGRS*QQDGGHGSRNPLRSVQRLTCRSNQ 625
           G G +    GG GS  P    + L C+ N+
Sbjct: 253 GTGGTGTSSGGGGSFQPPTLTEELLCKHNE 282


>AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 536 GVGRS*QQDGGHGSRNPLRSVQRLTCRSNQ 625
           G G +    GG GS  P    + L C+ N+
Sbjct: 253 GTGGTGTSSGGGGSFQPPTLTEELLCKHNE 282


>AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 536 GVGRS*QQDGGHGSRNPLRSVQRLTCRSNQ 625
           G G +    GG GS  P    + L C+ N+
Sbjct: 253 GTGGTGTSSGGGGSFQPPTLTEELLCKHNE 282


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 753,749
Number of Sequences: 2352
Number of extensions: 16273
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67741110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)