Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021726
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    27   2.0  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   4.5  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   6.0  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    25   7.9  

>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -2

Query: 608 LLFNFIYIVERPSKKTKKLKV-NISIKHIILYKLY 507
           L+ + I IV +PSKK  KLK+ NI+++   +  LY
Sbjct: 282 LVTSSISIVSKPSKKGSKLKISNITLRSGSVVSLY 316


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 526 LYYINFISYVSMPPMNTTLTPNS*IYRRSV*MKKVDKIFIIADIFMFFLCN*LIY 362
           +Y I F+ Y S P   +T      +   S+   K+    ++  +FMF +CN L+Y
Sbjct: 601 MYGIAFLVYFSKPKKGSTFMEKF-LSLLSINQLKI----VVGSLFMFTICNLLMY 650


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 282 WRQRRDGD--VSKALHSMGTGTKRAMAERGDRAMYGR 178
           W+ ++DG   +  A H+ G G+ R  A    RAM GR
Sbjct: 652 WKWKKDGQPWLVVAEHNYGEGSAREHAALQPRAMNGR 688


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -2

Query: 653 NIYFVKLPFSYKHGCLLFNFIYIV----ERPSKKTKKLKVNISIKHIILYK 513
           + YF+ L F Y  G L FN   ++     +P   T  L + + + H   YK
Sbjct: 358 DFYFINLLFKYISGSLTFNRGTVLAATSSQPRVSTPSLDIALGVAHRNPYK 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,135
Number of Sequences: 5004
Number of extensions: 47024
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)