Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021726
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0878 + 8624616-8624761,8625861-8626274,8626895-8626945,862...    31   0.89 
03_01_0619 + 4556665-4557132                                           31   1.2  
03_06_0036 + 31208993-31209391,31209616-31209693,31209881-312099...    28   6.2  
06_03_0828 + 25137782-25138312,25141349-25141588                       28   8.3  

>08_01_0878 +
           8624616-8624761,8625861-8626274,8626895-8626945,
           8627179-8627215,8629535-8630059
          Length = 390

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 155 SASPSPHHRPYIARSPRSAIARFVPVPILCNAFDTSPS 268
           S S  P+  P IA+SPR+ +   +P P    A + +PS
Sbjct: 72  SKSVHPNQNPQIAKSPRTPVTHQLPPPYELRAEEAAPS 109


>03_01_0619 + 4556665-4557132
          Length = 155

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = +1

Query: 172 PSSPVHRSIAPLRHRPFRARPHTVQCF*YIAVAPLSPSLGHRKPRVRRLKVLQLII 339
           P SP  R I  L  R        V+   + A  PLSP +   +PRVRR K+L+ +I
Sbjct: 99  PPSPAQRRI--LLRRSASDLGGRVRRADHDAPPPLSPGVARGRPRVRRYKLLEEVI 152


>03_06_0036 +
           31208993-31209391,31209616-31209693,31209881-31209946,
           31211556-31211621,31211815-31211865,31212635-31212928
          Length = 317

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/77 (28%), Positives = 37/77 (48%)
 Frame = +1

Query: 109 VYPRKDETKVVCSRRFRVAVAPSSPVHRSIAPLRHRPFRARPHTVQCF*YIAVAPLSPSL 288
           V P+K      CS    V+   SSP   +I+  +   F+ +     C    A AP + + 
Sbjct: 97  VVPQKSSPTTECSSS--VSSMSSSPTATAISSSKSPAFKKKGSR-GCDQRKATAPAAATT 153

Query: 289 GHRKPRVRRLKVLQLII 339
            +++PRVRR ++ + II
Sbjct: 154 TNKRPRVRRERLGERII 170


>06_03_0828 + 25137782-25138312,25141349-25141588
          Length = 256

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = -2

Query: 248 HCTVWGRARNGRWRSGAIERCTGDDGATATRKRREQTTLVSSLRG 114
           H T W R   GRW  G   R     GA       E+  +    RG
Sbjct: 125 HSTPWRRTTGGRWARGGGGRLEAGGGAAEEAGGGERAAVSGEQRG 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,042,398
Number of Sequences: 37544
Number of extensions: 290986
Number of successful extensions: 917
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)