Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021726
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6636| Best HMM Match : COX7C (HMM E-Value=1.8)                      30   1.6  
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)               29   2.8  
SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)                    28   6.4  
SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_6636| Best HMM Match : COX7C (HMM E-Value=1.8)
          Length = 237

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
 Frame = -2

Query: 578 RPSKKTKKLKVNI-------SIKHIILYKLYKLCFDASNEHYANSKFVDLQEERLNEKS 423
           RPS KTKK  +         +IKH++ +   ++C      +Y  SK+     + L E S
Sbjct: 83  RPSPKTKKSTITFLGFGGETAIKHLVPFAAVRVCQSRKRSNYRASKYRGFSRQTLYESS 141


>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
          Length = 242

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 160 VAVAPSSPVHRSIAPLRHRPFRARPH 237
           +A  P SP H  +AP  HRP   RPH
Sbjct: 77  IAPRPRSP-HGPVAPRPHRPISPRPH 101


>SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 611 CLLFNFIYIVERPSKKTKKLKVNISIKHIILYKLYKLCFD 492
           CL+ N IY  ER  +      V  +  H++   L+ LC+D
Sbjct: 7   CLINNAIYFTERQYRSAVLSYVTFTKSHLLSAILFLLCYD 46


>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 2322

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 647  YFVKLPFSYKHGCLLFNFIYIVERPSKKTKKLK 549
            YFVKLP S +H   L     ++E+  KK  K K
Sbjct: 1982 YFVKLPLSTEHTGHLLGEAAVIEQEMKKRMKRK 2014


>SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 566 KTKKLKVNISI--KHIILYKLYKLCFDASNE 480
           K+ K  +NIS+  ++IILY LYK+     NE
Sbjct: 509 KSSKESLNISLDRQYIILYTLYKITITTENE 539


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,725,316
Number of Sequences: 59808
Number of extensions: 340298
Number of successful extensions: 800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)