Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021726
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    31   0.80 
Z35602-2|CAA84671.3|  824|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC199170-9|ABO33267.1|  388|Caenorhabditis elegans Hypothetical ...    29   4.3  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    28   7.4  

>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 157 RVAVAPSSPVHRSIAPLRHRPFRARPHTVQCF*YIAVAPL-SPSLGHRKPRVRR 315
           R A +P +PV  S+AP++ +PF ARP         AVAP  +P +  R P   R
Sbjct: 268 RRAPSPKAPV-ASVAPVKPKPFVARPAPSFGKPRAAVAPARAPQITQRAPAATR 320


>Z35602-2|CAA84671.3|  824|Caenorhabditis elegans Hypothetical
           protein R13G10.2 protein.
          Length = 824

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 252 KALHSMGTGTKRAMAERGDRAMYGR*WGDGDAEATRTNYFG 130
           KA+  +G G    +A + DR    R W   DA+  RT YFG
Sbjct: 635 KAIDDLGAGLIEKIAVKFDR----RFWDTVDADGLRTEYFG 671


>AC199170-9|ABO33267.1|  388|Caenorhabditis elegans Hypothetical
           protein T08D2.8 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 157 RVAVAPSSPVHRSIAPLRHRPFRARPHTVQCF*YIAVAPL-SPSLGHRKPRVRR 315
           R A +P +PV   +AP++ +PF ARP         AVAP  +P +  R P   R
Sbjct: 264 RRAPSPKAPV-APVAPVKPKPFVARPAPNFGKPRAAVAPARAPQITQRAPAATR 316


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +1

Query: 151 RFRVAVAPSSPVHRSIAPLRHRPFRARPHTVQCF*YIAVAPLSPSL 288
           R R  VAPS+   R I P   RP   R  T +       AP +P L
Sbjct: 248 RTRPYVAPSTTTQRYIEPTTQRPTTRRATTKRITTTTTAAPTTPRL 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,461,438
Number of Sequences: 27780
Number of extensions: 263449
Number of successful extensions: 671
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)