Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021726
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58020.1 68418.m07260 expressed protein contains PF04641: Pro...    29   3.9  
At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-contain...    29   3.9  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    27   9.1  

>At5g58020.1 68418.m07260 expressed protein contains PF04641:
           Protein of unknown function, DUF602
          Length = 354

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 287 SDGDSGATAMYQKHCTVWGRARNGRWRSGAIERCTGDDGATATRKRREQTTLV 129
           SDG S  T   Q  C V G   NG+++  A+  C     A A ++ +  + LV
Sbjct: 182 SDGSSQDTTSAQFQCPVSGLEFNGKYKFFALRGCGHVMSAKALKEVKSSSCLV 234


>At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-containing
           protein contains Pfam profile PF00169: PH domain
          Length = 1322

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 611 CLLFNFIYIVERPSKKTKKLKVNISIKHI 525
           CL+  FIY++E P  K+ K   ++  KHI
Sbjct: 680 CLVGPFIYVLESPGSKSYKKYTSLRGKHI 708


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
           binding domain-containing protein contains Pfam profiles
           PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
           binding domain
          Length = 2176

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -2

Query: 584 VERPSKKTKKLKVNISIKHIILYKLYKLCFDASNEHY--ANSKFVDLQEERLNEKS 423
           +++P K  K+ ++N + K     KL+ L FD S + +   N+   +L+E++  + S
Sbjct: 809 LDKPGKDDKRSEINFTDKDSTATKLFSL-FDESRQPFPAKNTSASELKEKKAGDSS 863


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,367,288
Number of Sequences: 28952
Number of extensions: 235163
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)