Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021725
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 42 1e-04
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 28 0.97
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 27 1.7
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 27 3.0
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 27 3.0
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 25 6.9
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 25 6.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 9.1
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 9.1
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = -2
Query: 633 SKGIDSGYGEDDAYNVYDKPWRNQDNVGAHIYRPSRHADR 514
+ G+ SG+ ++D+YNVYDKPWR + + +YRP R
Sbjct: 455 ASGLGSGFQDEDSYNVYDKPWRAAPS--STLYRPGATLSR 492
Score = 26.2 bits (55), Expect = 3.9
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = -1
Query: 526 ARRPGLYGDLEAVANTRRFV----ADKEFAGTSSS-NTRSGPVQFEKDAPSRDESSRSNQ 362
+R+ +LE + + R+ A K+F G+ +R+GPV FEKD
Sbjct: 491 SRQVDASAELERITSESRYDVLGNAHKKFKGSDEVVESRAGPVTFEKDIA---------- 540
Query: 361 SEADFDPFGLDRFLS 317
DPFG+D FL+
Sbjct: 541 -----DPFGVDTFLN 550
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 28.3 bits (60), Expect = 0.97
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 354 ASDWLLREDSSLLGASFSNCTGPERVLE 437
+S WL RED +L +S + TG E +L+
Sbjct: 82 SSPWLTREDKKILVSSLTQMTGNEPLLK 109
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 335 TERIEVSLRLVAARGFVSAWSILLKLHRSR 424
T R + + LV + ++ AW +LKLH R
Sbjct: 565 TLRTSIFVALVGSEDYIDAWERVLKLHLKR 594
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 26.6 bits (56), Expect = 3.0
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Frame = +3
Query: 276 WSRFLDDLSALFASLKNRSR----PNGSKSASDWLLREDSSLLGASFSNCTGPERVLELL 443
+S F DD +A S K S P+ KS W LR S L+G S PE +
Sbjct: 1044 YSEFADDTTAQAGSSKRDSAISEDPDHHKSVW-WSLRWQSRLVGRGKSTALTPEETRAIQ 1102
Query: 444 VPANSLSATNL 476
A +L +
Sbjct: 1103 EQAKTLKKAGM 1113
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -2
Query: 546 HIYRPSRHADRDSTGTWRPSLTRADSWRTKSSPAPVAPTP 427
HI +PS + S G R + + D R +SSP VAPTP
Sbjct: 461 HISKPSVVNQQKSRGGPRTAKLKNDLRRIQSSPI-VAPTP 499
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 591 NVYDKPWRNQDNVGAHIYRPSR 526
N+Y K W + D +GA + P+R
Sbjct: 100 NLYRKKWTSLDGLGALVISPTR 121
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 465 RTKSSPAPVAPTPALDRCSLRRMLQAETNPLAATS 361
+T++ PA APT L S + Q++T P A +
Sbjct: 115 QTQAQPAQAAPTGGLFGLSGQNQTQSQTQPAQANT 149
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -2
Query: 582 DKPWRNQDNVGAHIYRPSRHADRDSTGTWRP 490
D +R +N+ + + + + +D D G WRP
Sbjct: 758 DAQFRILNNLASTMLKDGKASDDDDNGDWRP 788
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 475 RFVADKEFAGTSSSNTRSGPVQFEKDAPSRDESSRSNQSEADFD 344
RF +EF G+ + SGP +++ D D + S S + D
Sbjct: 270 RFDEGEEFVGSDLESDFSGPGEYDVDDGFIDNRATSQLSPVESD 313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,105
Number of Sequences: 5004
Number of extensions: 40458
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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