Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021725
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0819 - 32014236-32016059 42 4e-04
06_01_0804 + 6038640-6040262 42 5e-04
01_06_1269 + 35883062-35883173,35883331-35883893,35884128-358841... 31 0.58
03_02_0661 + 10247128-10247895 30 1.3
06_03_0022 - 15536811-15536899,15537485-15537664,15537706-155379... 30 1.8
05_03_0598 - 16020856-16020959,16021079-16021457,16023146-160232... 30 1.8
01_06_0726 + 31514480-31514932 30 1.8
08_02_1203 + 25262875-25263492,25264761-25264813,25265308-252653... 29 2.3
02_05_1251 - 35249550-35249814,35249962-35250347,35250489-352505... 29 2.3
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123 29 3.1
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504... 29 4.1
03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424... 29 4.1
05_01_0239 - 1785699-1785980,1786061-1786284,1786380-1786526,178... 28 5.4
01_06_1842 - 40278875-40280131 28 5.4
12_02_0663 + 21653536-21653541,21654027-21654212,21654316-216543... 28 7.1
04_01_0619 - 8125611-8127967,8128449-8130123 28 7.1
03_06_0459 + 34085134-34086269,34086471-34086717 28 7.1
12_02_1167 + 26647293-26648356,26648493-26648577,26649129-266491... 27 9.4
11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960 27 9.4
03_05_0705 - 26965352-26965542,26965732-26965763,26966141-269662... 27 9.4
02_05_0574 - 30086264-30086367,30087653-30087746,30088293-300885... 27 9.4
>02_05_0819 - 32014236-32016059
Length = 607
Score = 41.9 bits (94), Expect = 4e-04
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = -1
Query: 511 LYGD----LEAVANTRRFVADKEFAGTSS-SNTRSGPVQFEKDAPSRDESSRSNQSEADF 347
+YGD LE V T RF DK F+G S S R PV+F+K + +
Sbjct: 506 VYGDADEQLEKVMKTDRFKPDKGFSGASERSGKRDRPVEFDK--------------QEEN 551
Query: 346 DPFGLDRFLSEAKR 305
DPFGLD+FL+E K+
Sbjct: 552 DPFGLDQFLTEVKK 565
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 630 KGIDSGYGEDDAYNVYDKPWRNQDNVGAHIYRPSRHADRDSTG 502
KG+DSG+ DD YN+Y K + +YRP + D D G
Sbjct: 466 KGMDSGFATDDQYNIYSKGLFTAQPTLSTLYRPKKDGDSDVYG 508
>06_01_0804 + 6038640-6040262
Length = 540
Score = 41.5 bits (93), Expect = 5e-04
Identities = 31/78 (39%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = -1
Query: 517 PGLYGD----LEAVANTRRFVADKEFAGTSSS---NTRSGPVQFEKDAPSRDESSRSNQS 359
P YGD L +A TRRFV DK F G +S R PV+F D P +E
Sbjct: 472 PDAYGDADEHLGKIAKTRRFVPDKAFTGAPASVAAGKRERPVEF--DGPEMEE------- 522
Query: 358 EADFDPFGLDRFLSEAKR 305
DPF LD+FL++ K+
Sbjct: 523 ----DPFHLDQFLTQMKK 536
Score = 35.5 bits (78), Expect = 0.035
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 630 KGIDSGYGEDDAYNVYDKPWRNQDNVGAHIYRPSRHADRD 511
KG+ SG+ DD YNVY + +Y+PS+H + D
Sbjct: 432 KGMGSGFAGDDQYNVYSGRLFAAQPALSTLYKPSKHGEED 471
>01_06_1269 +
35883062-35883173,35883331-35883893,35884128-35884196,
35884337-35884624
Length = 343
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +3
Query: 513 PGRRAGWADRCARRRCPGSATACRTRCTRHPLRSRCRF 626
PG R W DRC R C G TR + SRCRF
Sbjct: 122 PGSRHVWIDRCGLRGC-GDGLLDVTRGSTDVTVSRCRF 158
>03_02_0661 + 10247128-10247895
Length = 255
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -2
Query: 480 RADSWRTKSSPAPVAPTPALDRCSLRRMLQ-AETNPLAATSR 358
+A+ R+K +PAP P P++DR LR +L+ A + P TSR
Sbjct: 86 KAERSRSKGAPAPPPPPPSVDR--LRALLRLAPSVPPGFTSR 125
>06_03_0022 -
15536811-15536899,15537485-15537664,15537706-15537982,
15538680-15538883,15539431-15539496,15539933-15539953,
15541622-15541731,15543244-15544236,15544928-15544955,
15545035-15545093,15545177-15545204,15545453-15545475,
15545784-15545853,15546980-15547033,15547127-15547169,
15548126-15548175
Length = 764
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Frame = +3
Query: 528 GWADRCARRRCP----GSATACRTRCTRHPLRSRCRF 626
G RCA CP GS+ RC RH RCRF
Sbjct: 269 GGGKRCAVTGCPNAACGSSQGLTDRCVRHGGGRRCRF 305
>05_03_0598 -
16020856-16020959,16021079-16021457,16023146-16023245,
16023452-16023640,16023992-16024089
Length = 289
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = +3
Query: 342 GSKSASDWLLRE-DSSLLGASFSNCTGPERVLELLVPANSLSATNLRVLATASRSP*SPG 518
G++S W R + + G N + V +LL+ + ++ LR L S G
Sbjct: 158 GARSEDQWKNRRMEMAPCGGVGCNSVFGQEVADLLLATTATASRGLRRLDLLSL-----G 212
Query: 519 RRAGWADRCARRRCPGSATACRTRCT 596
+ W ARRRC G + TR +
Sbjct: 213 APSSWCMMIARRRCGGGFSGAWTRAS 238
>01_06_0726 + 31514480-31514932
Length = 150
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/93 (25%), Positives = 37/93 (39%)
Frame = +3
Query: 222 LDVGSVAPLLVWWSCRSWWSRFLDDLSALFASLKNRSRPNGSKSASDWLLREDSSLLGAS 401
L V V+P W R+W R L L+ + + S P+G+ S+ D++ +
Sbjct: 59 LVVRDVSPAAGWCGHRAW-RRLLRRLAQETRCICSSSSPSGAASSRPITFGYDAASYAKN 117
Query: 402 FSNCTGPERVLELLVPANSLSATNLRVLATASR 500
F + P L PA + A N A R
Sbjct: 118 FDDGRRPAAHYAALAPAPAAGAANAAAHEPAGR 150
>08_02_1203 +
25262875-25263492,25264761-25264813,25265308-25265373,
25265581-25265695,25265860-25265970
Length = 320
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 368 AARGFVSAWSILLKLHRSRAGVGATGAGELFVRHESARVSDGLQVPVE 511
AA G A + +++ RSRAG+GA A + SA V++G + VE
Sbjct: 99 AAGGGAGAEPVGIEIRRSRAGLGAEPAVSVAPPQPSAEVAEGERRRVE 146
>02_05_1251 -
35249550-35249814,35249962-35250347,35250489-35250578,
35250672-35250955,35252213-35252429
Length = 413
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -1
Query: 451 AGTSSSNTRSGPVQFEKDAPSRDES--SRSNQSEADFDPFGLDRFLSEAKR 305
A S+NT P ++ D + + SN SE DPFGLD L +
Sbjct: 228 AAVESNNTDDNPQAAASNSLPDDSTHAAASNSSEESSDPFGLDGLLEHKSK 278
>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
Length = 369
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = -2
Query: 534 PSRHADRDSTGTWRPSLTRADSWRTKSSPAPVAPTPALDRCSLRRMLQAETNPLAAT 364
P+ H S T + T + T +SPAPV +PA D L+ L + + PL A+
Sbjct: 41 PAAHLCACSPPTTTHTTTTVTTTTTTASPAPVTTSPA-DVAWLKSQLASNSLPLLAS 96
>04_04_1592 -
34649484-34649547,34650118-34650186,34650325-34650444,
34650630-34650742,34650824-34650898,34651224-34651346,
34651427-34651446,34652354-34652410,34652922-34653860,
34653961-34654189,34654296-34654439,34654527-34654601,
34655363-34655433,34656103-34656205,34656407-34656633,
34656791-34656908,34657239-34657369,34657709-34657802
Length = 923
Score = 28.7 bits (61), Expect = 4.1
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Frame = -2
Query: 627 GIDSGYGEDDAYNVYDK---PWRNQDNVGAHIYRPSRHADRDSTGTWRPSLTRADSWRTK 457
GI ED V D+ P + N ++ R + D R +L A +W+
Sbjct: 681 GISEETREDAKPGVIDRMGFPSSAEPNTHRNVSRMRKPRDNCYIEVSRAAL--AYTWKRG 738
Query: 456 SSPAPVAPTPALDRCSLRRMLQAETNPLAATSRRLTSIRSV 334
SS A PT A D L +++ L++T RLT ++ V
Sbjct: 739 SSQAAETPTIASDEDVLSVLMEQHELFLSSTRSRLTKLQIV 779
>03_05_0744 +
27336697-27337131,27337329-27337787,27340852-27342418,
27342641-27343044
Length = 954
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 400 PSQTAPVQSGCWSYWCRRT 456
P + AP S CWS CRR+
Sbjct: 94 PPRAAPAPSACWSALCRRS 112
>05_01_0239 -
1785699-1785980,1786061-1786284,1786380-1786526,
1786667-1786775,1786880-1786981,1787090-1787164,
1787277-1787453,1787534-1787623,1787717-1787844,
1787909-1788356
Length = 593
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 453 SPAPVAPT-PALDRCSLRRMLQAETNPLAATSRRLTSIR 340
SP P +P PAL R RR+ P RRLTS R
Sbjct: 8 SPPPTSPPGPALSRLPCRRVAPPPVLPFPFPLRRLTSRR 46
>01_06_1842 - 40278875-40280131
Length = 418
Score = 28.3 bits (60), Expect = 5.4
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Frame = -2
Query: 531 SRHADRDSTGTWRPSLTRADSWRTKSSPAPVAPTPALDRCSLRRML--QAETNPLAATSR 358
SR R T P + A + ++ A AP PA LRR++ T L T
Sbjct: 247 SRSNSRGETSAAAPPPSIATAACAAAAAAATAPAPAPATSMLRRLVPGHGRTGALTVTGI 306
Query: 357 RLTSIRSVWIGS*ARRREPTSRRGSA 280
RL VW RR ++G+A
Sbjct: 307 RLGRASPVW----QLRRNKLQQQGAA 328
>12_02_0663 +
21653536-21653541,21654027-21654212,21654316-21654393,
21654581-21654694,21654799-21654865,21654954-21655015,
21655123-21655262,21655552-21655678,21655758-21655872,
21656111-21656199,21656593-21656733,21657067-21657192,
21657655-21657714,21658285-21658443
Length = 489
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 424 SGPVQFEKDAPSRDESSRSNQSEAD 350
S ++ EKDA S D SS SNQ AD
Sbjct: 457 SESLRLEKDAESDDSSSGSNQRPAD 481
>04_01_0619 - 8125611-8127967,8128449-8130123
Length = 1343
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +3
Query: 438 LLVPANSLSATNLRVLATASRSP*SPGRRAGWADRCARRRCPGSATACRTRCTRHPLRSR 617
L++ N+ SA + + + S + S + RRR PG A + R R T PLR R
Sbjct: 550 LILNNNNFSAASRAAVTSQSYAAASWRSHPSRSKAARRRRWPGQAWSQRMRPTVSPLRRR 609
>03_06_0459 + 34085134-34086269,34086471-34086717
Length = 460
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 474 DSWRT-KSSPAPVAPTPALDRCSLR 403
D W T ++ P P+AP +L+RC+ R
Sbjct: 57 DDWATMRALPPPIAPFDSLERCAER 81
>12_02_1167 +
26647293-26648356,26648493-26648577,26649129-26649191,
26649381-26649443,26649987-26650070,26650229-26650783
Length = 637
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -2
Query: 570 RNQDNVGAH--IYRPSRHADRDSTGTWRPSLTRADSWRTKSSPAPVAPTPALDRCSLRRM 397
R + VG H RP + + + T + S +A+ + A AP+ +DR R
Sbjct: 169 RGRGRVGGHGVAKRPKKEEEEEET---KLSAPKAEQLEEEEGAAVAAPSGMIDRWKATRY 225
Query: 396 LQAETNPLAATSRR 355
AE + LA R
Sbjct: 226 ATAEASLLAIMRAR 239
>11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960
Length = 122
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -2
Query: 543 IYRPSRHADRDSTGTWRPSLTRADSWRTKSSPAPVAPTPALDRCSLRRMLQAETNPL 373
+ P R GT RPS + S ++SSP P P+ + R + A +P+
Sbjct: 48 VTEPKTKQPRGVKGTRRPSWSSWSSTASRSSPPPGRGAPSAAAAAELRSVPAGPDPM 104
>03_05_0705 -
26965352-26965542,26965732-26965763,26966141-26966235,
26966737-26966810,26966894-26967029,26967137-26967200,
26967285-26967350,26967445-26967587,26969314-26969407,
26969779-26969902,26970016-26970193,26970273-26970395,
26970884-26970955,26971032-26971139,26972511-26972627,
26972757-26972889,26973209-26973299,26974642-26974722,
26975342-26975421,26975500-26975705,26977417-26977893
Length = 894
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -1
Query: 565 PGQRRRAHLSAQPARRPGLYGDLEAVANTRRFVADKEFAGTSSSNTRSGPVQFEKDAPSR 386
PG R + PA +P L T + G SSS++ S P E + PSR
Sbjct: 52 PGAGRDGAAAPVPALQPAEADVLSGEVETEMAAGMEAREGASSSSSASAPAVGEVEPPSR 111
>02_05_0574 -
30086264-30086367,30087653-30087746,30088293-30088555,
30089122-30089202,30089293-30089422,30089545-30089730,
30090013-30090138
Length = 327
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = -1
Query: 568 EPGQRRRAHLSAQPARRPGLYGDLEAVANTRRFVADKEFAGTSSSNTRSGPVQFEKDAPS 389
EP Q+ + +R + +A NT F ++AG S+ V EK +
Sbjct: 14 EPKQQEKKLPEHLEVQRTRVVCKADAPVNTEGF----QYAGAYSAMGIDNSVSAEKFCKN 69
Query: 388 -RDESSRSNQSEADFDPFGLDRFLSEAKR 305
+ E SR + + +FD G+D ++ A R
Sbjct: 70 FKVEISRLTEDDMEFDMIGIDASIANAFR 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,338
Number of Sequences: 37544
Number of extensions: 289528
Number of successful extensions: 1297
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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