Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021725
(634 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44017| Best HMM Match : SKIP_SNW (HMM E-Value=0) 62 5e-10
SB_36917| Best HMM Match : RinB (HMM E-Value=2.2) 33 0.15
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 29 2.4
SB_26483| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 3.1
SB_8102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24) 28 5.5
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 28 7.2
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025) 28 7.2
SB_56594| Best HMM Match : DUF11 (HMM E-Value=1.2) 27 9.6
SB_197| Best HMM Match : LISCH7 (HMM E-Value=1.3) 27 9.6
SB_43167| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_44017| Best HMM Match : SKIP_SNW (HMM E-Value=0)
Length = 754
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = -2
Query: 633 SKGIDSGYGEDDAYNVYDKPWRNQDNVGAHIYRPSRH-ADRDSTGTWRPSLTRADSWR 463
SKG+DSG+G+DDAYNVYDK WR + + IYRPS+ D+D G L + D ++
Sbjct: 637 SKGMDSGFGDDDAYNVYDKAWRQGASTASSIYRPSKGIVDKDIYGDDLEKLVKTDRFQ 694
Score = 56.8 bits (131), Expect = 1e-08
Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = -1
Query: 511 LYGD-LEAVANTRRFVADKEFAGTSSSNTRSGPVQFEKDAPSRDESSRSNQSEADFDPFG 335
+YGD LE + T RF DKEFAGT R GPVQFEK+ + DPFG
Sbjct: 679 IYGDDLEKLVKTDRFQPDKEFAGTDHGQRRDGPVQFEKE---------------EEDPFG 723
Query: 334 LDRFLSEAKR 305
LD+FL++AK+
Sbjct: 724 LDKFLTQAKK 733
>SB_36917| Best HMM Match : RinB (HMM E-Value=2.2)
Length = 522
Score = 33.5 bits (73), Expect = 0.15
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = -2
Query: 624 IDSGYGEDDAYNVYDK-PWRNQDNVGAHIYRPSRHADRDSTGTWRPSLTRADSWRTKSSP 448
+D +D+ ++ D P N+D+ + R DS G R L A+ R +SP
Sbjct: 28 VDLKLVDDETIDLIDSAPVANEDDATRNSNLVGRECSLDS-GVSRIRLEGAEETRGNTSP 86
Query: 447 AP-VAPTPALDRCSLRRMLQAETNPL 373
P +AP P R RR ++ TN L
Sbjct: 87 EPPIAPRPPSGRPQSRRRKKSATNEL 112
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 270 SWWSRFLDDLSALFASLKNRSRPNGSKSAS 359
SWWS +DD + +F + S+ + SK +S
Sbjct: 647 SWWSSSVDDKATMFGGFFSSSQSSASKQSS 676
>SB_26483| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1702
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -1
Query: 445 TSSSNTRSGPVQFEKDAPSRDESSRSNQSEADFDP 341
+S S+T S PVQ +K + ++D+S SN++ D P
Sbjct: 94 SSDSSTSSPPVQRKKRSHNKDKSFVSNEANEDIIP 128
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 549 AHIYRPSRHADRDSTGTWRPSLTRADSW 466
+H+YRP R ++ GTW P W
Sbjct: 2235 SHVYRPWRARLHETRGTWTPRYQNRHQW 2262
>SB_8102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 690
Score = 28.7 bits (61), Expect = 4.1
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = +3
Query: 411 CTGPERVLELLVPANSLSATNLRV--LATASRSP*SPGRRAGWADRCARRRCPGSATACR 584
C GP R LE L P N LS + + L+ + RS +G AR+ G TA +
Sbjct: 180 CHGPHRQLEALQPCNVLSNAPVLIIQLSASYRSTCYRSACSGRRRDSARKAAAGGRTADQ 239
Query: 585 --TRCTRHPLRSRCR 623
T C SR R
Sbjct: 240 GPTACRSGDSASRSR 254
>SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)
Length = 453
Score = 28.3 bits (60), Expect = 5.5
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = +3
Query: 552 RRCPGSATACRTRCTRHPLRSRCRFPC 632
+ CP C+ +CT + +C PC
Sbjct: 46 KNCPPCKEGCQNKCTHSECKKKCGEPC 72
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = -1
Query: 478 RRFVADKEFAGTSSSNTRSGPVQFEKDAPSRDESSRSNQSEA 353
RR DKE TSS+ RS + +KD P+R +SS S+ S +
Sbjct: 979 RRKDKDKE-KRTSSTRGRSPTRKDKKDKPARRQSSSSSSSSS 1019
>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 519 DRDSTGTWRPSLTRADSWRTKSSPAPVAPTPALDRCSLRRMLQAETNPLAATS 361
DR S W+PSL+ SW +PTP++ + + Q+ + P A S
Sbjct: 360 DRRSVELWQPSLSSPPSW---------SPTPSMRKSKKKEKRQSSSRPKDADS 403
>SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)
Length = 2182
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 546 HIY-RPSRHADRDSTGTWRPSLTRADSWRTKSSP 448
HIY +P + ++ T WR +L R +WR +++P
Sbjct: 2129 HIYLKPHANGHKERT-CWRKTLQRLKTWRKETAP 2161
>SB_56594| Best HMM Match : DUF11 (HMM E-Value=1.2)
Length = 375
Score = 27.5 bits (58), Expect = 9.6
Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Frame = +3
Query: 411 CTGPERVLELLVPANSLSATNLRV---LATASRSP*SPGRRAGWADRCARRRCPGSATAC 581
C GP R LE N L L + L T S G R A R RCP + A
Sbjct: 54 CHGPHRQLEAFQICNILVKVWLFLPEELETESSRCIPCGERGFSACRSGGLRCPSRSHAM 113
Query: 582 RTRCTRHPLRSRCRFP 629
R+ TR R R P
Sbjct: 114 RSMRTRRRARYWDRLP 129
>SB_197| Best HMM Match : LISCH7 (HMM E-Value=1.3)
Length = 120
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 540 RCARRRCPGSATACRTRCTR-HPLRSRCR 623
RC RC AT CR TR H +RCR
Sbjct: 29 RCFAARCRCFATRCRCFATRCHCFAARCR 57
>SB_43167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -2
Query: 513 DSTGTWRPSLTRADSWRTKSSPAPVAPTPALDRCSLRRMLQAETNPLAATSRRLTSIRSV 334
D T T+R L SW+ K A A P + +L R +++T P A R+ I
Sbjct: 20 DKTDTYRNKLMLNSSWQPKRKKAS-ASRPEMYIVTLFRTEKSKTIPCPAARTRIAHITGG 78
Query: 333 WIGS 322
+ S
Sbjct: 79 YANS 82
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,220,498
Number of Sequences: 59808
Number of extensions: 318210
Number of successful extensions: 1177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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